View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_3 (Length: 500)
Name: NF10444_low_3
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 33010968 - 33011255
Alignment:
| Q |
18 |
tcaacatggcggaaaataacaaacctgaagaagaacccttcttcctcacccttcttcctcacaccgattccgcaatcaacaacgactcagccatgtctca |
117 |
Q |
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| T |
33010968 |
tcaacatggcggaaaataacaaacctgaagaagaacccttcttcctcacccttgttcctcacaccgattccgcaatcaacaacgactcagccatgtctca |
33011067 |
T |
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| Q |
118 |
actcagagactcactcctctctcaactcacccaactcaacccttctctaaccccttccaccctaaccgatcgctcttccttcattcaatctcgccttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33011068 |
actcagagactcactcctctctcaactcacccaactcaacccttctctaaccccttccaccctaaccgatcgctcttccttcattcaatctcgccttcaa |
33011167 |
T |
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| Q |
218 |
cagctttttcattcttttcgcacccccactcaccctccttacgccttggtatgcaccccctcgctctttctctctatctacattactg |
305 |
Q |
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| T |
33011168 |
cagctttttcattcttttcgcacccccactcaccctccttacgccttggtatgcaccccctcgctctttctctctatctacattactg |
33011255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 354 - 493
Target Start/End: Original strand, 33011304 - 33011443
Alignment:
| Q |
354 |
atgagtgcagatgattaacaaggcaataactgaattgaaagacaaaataggctcgacagaggaggctatttcggagtttgtgaaaagagaatatgaggat |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33011304 |
atgagtgcagatgattaacaaggcaataactgaattgaaagacaaaataggctcgacagaggaggctatttcggagtttgtgaaaagagaatatgaggat |
33011403 |
T |
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| Q |
454 |
ttgccgtgggcacatgggaagattttgagtcttcatctca |
493 |
Q |
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| T |
33011404 |
ttgccgtgggcacatgggaagattttgagtcttcatctca |
33011443 |
T |
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