View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_4 (Length: 463)
Name: NF10444_low_4
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 37 - 459
Target Start/End: Complemental strand, 37180806 - 37180382
Alignment:
| Q |
37 |
tcacattctatattttgtttaacaatattattnnnnnnntactatgcccataaatatttattattcttatttctttccttccaattcttgtaatcttctc |
136 |
Q |
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| T |
37180806 |
tcacattctatattttgtttaacaatattattaaaaaaatactatgcccataaatatttattattcttatttctttccttccaattcttgtaatcttctc |
37180707 |
T |
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| Q |
137 |
ttataccatttactaaactgatttgagttaagaattaataagttgaaggtcctagattcaagtcctgataagaagaaaacaattaacctattaacctttg |
236 |
Q |
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| T |
37180706 |
ttatatcatttactaaactgatttgagttaagaattaatgaattgaaggtcctagattcaagtcctgataagaagaaaacaattaacatattaacctttg |
37180607 |
T |
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| Q |
237 |
ttattagtaagattataggatgtaaggactatcgaatatgtaattt-nnnnnnntggtattttagtgtatttatatttataattaattggctcccttttg |
335 |
Q |
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| T |
37180606 |
ttattagtatgattataggatgtagggactatcgaatatgtaatttaaaaaaaatggtattttagtgtatttatatttataattaattggctcccttttg |
37180507 |
T |
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| Q |
336 |
tcaaagtgaaacccaagaagttgaact-nnnnnnntttgcaaaagctcttgatggttcttccgaactaccctccttcaaatctctctcaatctatataag |
434 |
Q |
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| T |
37180506 |
tcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccgaactaccctccttcaaatctatctcaatctatataag |
37180407 |
T |
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| Q |
435 |
accacccactatccctatgcttctc |
459 |
Q |
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| T |
37180406 |
accacccactatccctatgcttctc |
37180382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 371 - 459
Target Start/End: Original strand, 37189384 - 37189472
Alignment:
| Q |
371 |
ttgcaaaagctcttgatggttcttccgaactaccctccttcaaatctctctcaatctatataagaccacccactatccctatgcttctc |
459 |
Q |
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| T |
37189384 |
ttgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatccctatgcttctc |
37189472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 459
Target Start/End: Original strand, 37181236 - 37181364
Alignment:
| Q |
330 |
cttttgtcaaagtgaaacccaagaagttgaactnnnnnnnt-ttgcaaaagctcttgatggttcttccgaactaccctccttcaaatctctctcaatcta |
428 |
Q |
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| T |
37181236 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttct-ccaaacaactctccttcaaatctctctcactcta |
37181333 |
T |
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| Q |
429 |
tataagaccacccactatccctatgcttctc |
459 |
Q |
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| T |
37181334 |
tataagaccatccactacccctttccttctc |
37181364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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