View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_6 (Length: 405)
Name: NF10444_low_6
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 44286417 - 44286786
Alignment:
| Q |
15 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaata---ataataacaataataatgtacttgttattacttagagtcgaacatgaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
44286417 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattacttagagtcaaacatgaa |
44286516 |
T |
|
| Q |
112 |
ggaaacaaaaattgtaagaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgggaaaatggaaacgaagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286517 |
ggaaacaaaaattgtaagaaagagggaaaagaaaattaccatatgaataacctgagaagaaaagttggcaataagaggaatgggaaaatggaaacgaagg |
44286616 |
T |
|
| Q |
212 |
gaacgttgcagaagagagaaaatggttggggg----------tcaattatgatcgaagaaatttcaaaggggaatttgatttctggtagaaactaaactc |
301 |
Q |
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|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286617 |
gaacgttgcagaagagagaaaagggttgggggtgtgaaataatgaattatgatcgaagaaatttcaaaggggaatttgatttctggtagaaactaaactc |
44286716 |
T |
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| Q |
302 |
ctcttgcgttgcgttccaactggagtggtagcggtgctttcctcacttcccttttctaccaacaaatttt |
371 |
Q |
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| T |
44286717 |
ttcttgcgttgcgttccaactgtagtggtagcggtgctttcctcacttccctttttcaccaacaaatttt |
44286786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 44069596 - 44069219
Alignment:
| Q |
15 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataataataacaataataatgtacttgttattacttagagtcgaacatgaagga |
114 |
Q |
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| T |
44069596 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataataataacaataataatgtacttgttattacttagagtcgaacatgaagga |
44069497 |
T |
|
| Q |
115 |
aacaaaaattgtaagaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgggaaaatggaaacgaagggaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44069496 |
aacaaaaattgtaagaaagagggaaaagaaaattaccatatgaataacctgagaacaaaagttggcaataagaggaatgagaaaatggaaacgaag---- |
44069401 |
T |
|
| Q |
215 |
cgttgcagaagagagaaaatggttgggggt---------caat---------tatgatcgaagaaatttcaaaggggaatttgatttctggtagaaacta |
296 |
Q |
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||||||||| ||||||| |||||||||| ||| ||||| |||||||||| || |||||||||||||||| ||||||||| |
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| T |
44069400 |
-cttgcagaagcgagaaaagggttgggggtgtgaaagtgaaatggataatgaaatgatggaagaaatttgaatagggaatttgatttctgctagaaacta |
44069302 |
T |
|
| Q |
297 |
aactcctcttgcgttgcgttccaactggagtggtagcggtgctttcctcacttcccttttctaccaac-aaattttactgtaactggtgt |
385 |
Q |
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||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44069301 |
aactcttc-----ttgcgttccaactg--tctgtagcggtgctttcctcacttcccttttctaccaactaaattttactgtaactggtgt |
44069219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 44084203 - 44084285
Alignment:
| Q |
15 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaa---aataataataacaataataatgtacttgttattac |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
44084203 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattac |
44084285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 16443217 - 16443135
Alignment:
| Q |
15 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataata---ataacaataataatgtacttgttattac |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
16443217 |
atgaatgtattgaggcaaatcttcagcagcatgaggatccttcaaaataataataataataataataatgtacttgttattac |
16443135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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