View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_9 (Length: 375)
Name: NF10444_low_9
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 24729337 - 24729686
Alignment:
| Q |
1 |
accctgtttggcgtgctgagcgccttaaacaacaacaagcagaggtacattcaatttcatgaaacacccgacaccgaacaccatactgacacgaaaattt |
100 |
Q |
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| T |
24729337 |
accctgtttggcgtgctgagcgccttaaacaacaacaagcagaggtacattcaatttcatgaaacacccgacaccgaacaccatactgacacgaaaattt |
24729436 |
T |
|
| Q |
101 |
attttatagaaaatgatataattgaatgtaattacatgtgtctctttgttagacacatacacttgacactgacaccagacatgcattcgatcagaatcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24729437 |
attttatagaaaatgatataattgaatgtaattacatgtgtctctttgttagacacatacacttgacactgacaccagacatgcattcg------atcag |
24729530 |
T |
|
| Q |
201 |
aagtgtttgtgcttattttagaggggtcggtgctacagaggtttaagttgtactttgatgaatttgattgttaataattagggtttaattttgtgagtta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24729531 |
aagtgtttgtgcttattttagaggggtcggtgctacagaggtttaagttgtactttgatgaatttgattgttaataattagggtttaattt--tgagtta |
24729628 |
T |
|
| Q |
301 |
cagaaggaggtgcttgatgagaaagaatggtggaaaaagatagaaacgatgaaaagag |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24729629 |
cagaaggaggtgcttgatgagaaagaatggtggaaaaagatagaaacgatgaaaagag |
24729686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 4946245 - 4946210
Alignment:
| Q |
108 |
agaaaatgatataattgaatgtaattacatgtgtct |
143 |
Q |
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| T |
4946245 |
agaaaatgatataattgaatgtaatcacatgtgtct |
4946210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 1064173 - 1064144
Alignment:
| Q |
113 |
atgatataattgaatgtaattacatgtgtc |
142 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
1064173 |
atgatataattgaatgtaattacatgtgtc |
1064144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 22305563 - 22305599
Alignment:
| Q |
105 |
tatagaaaatgatataattgaatgtaattacatgtgt |
141 |
Q |
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|||||||||||| ||||||||||||||| |||||||| |
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| T |
22305563 |
tatagaaaatgaaataattgaatgtaatcacatgtgt |
22305599 |
T |
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