View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10445_high_10 (Length: 248)
Name: NF10445_high_10
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2643046 - 2642987
Alignment:
| Q |
1 |
tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacg |
60 |
Q |
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| T |
2643046 |
tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacg |
2642987 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2503555 - 2503613
Alignment:
| Q |
1 |
tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatac |
59 |
Q |
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| T |
2503555 |
tacacacttctctggtatgatagcgttgattactgcaaattaataattaaagtatatac |
2503613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 2632027 - 2632061
Alignment:
| Q |
15 |
gtatgatagtgttgattactgcaaattaataatta |
49 |
Q |
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| T |
2632027 |
gtatgatagtgttgattactgcaaattaataatta |
2632061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7332634 - 7332589
Alignment:
| Q |
1 |
tacacacttctctggtatgatagtgttgattactgcaaattaataa |
46 |
Q |
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| T |
7332634 |
tacacacttctctggtatgatagcagtgattattgcaaattaataa |
7332589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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