View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10445_high_12 (Length: 237)
Name: NF10445_high_12
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_high_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 37104932 - 37105170
Alignment:
| Q |
1 |
ctccaaaggacacttgcagagcactatcgtccttttccacacctacccagaaaccctcatcatcataatcttctaagttaatatcaagcccatccctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37104932 |
ctccaaaggacacttgcagagcactatcgtccttttccacacctacccagaaaccctcatcatcataatcttctaagttaatatcaagcccatccctcta |
37105031 |
T |
|
| Q |
101 |
ttcttcatatagaccagttgtagttccctcatcaccagcaacacttatgccattatttactccctcaccaaactcagtggacctatccttatttgtttca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37105032 |
ttcttcatatagaccaattgtagttccctcctcaccagcaacacttatgtcattatttaatccctcaccaaactcagtggacctatccttatttgtttca |
37105131 |
T |
|
| Q |
201 |
ttcacactagtggga--cccccatcaattataatattca |
237 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
37105132 |
ttcacaccagtgggacccccccatcaattataatattca |
37105170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University