View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10445_high_2 (Length: 375)
Name: NF10445_high_2
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 2535093 - 2534736
Alignment:
| Q |
1 |
tgacacaaacgcaacacacatagcaagtggtgatttgagaatactgcatccagtgttccagatatatggccactgccgggcattctccggccccatcgtt |
100 |
Q |
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| T |
2535093 |
tgacacaaacgcaacacacatagcaagtggtgatttgagaatactgcatccagtgttccagatatatggccactgccgggcattctccggccccatcgtt |
2534994 |
T |
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| Q |
101 |
actgtaaaagtgtttgaagacaatgtcttggcaagagaactccttgaaactaaaggagaaggaagagtcttggttattgatcgaggaggaagtatgaggt |
200 |
Q |
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| T |
2534993 |
actgtaaaagtgtttgaagacaatgtcttggcaagagaactccttgaaactaaaggagaaggaagagtcttggttattgatcgaggaggaagtatgaggt |
2534894 |
T |
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| Q |
201 |
gtgctcttgttggagggaacttggtgcagttggcacaaaatacggggtggtccggaattattgtgaatggttgtgttagagatgtggatgagattaattt |
300 |
Q |
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| T |
2534893 |
gtgctcttgttggagggaatttggtgcagttggcacaaaatacggggtggtccggaattattgtgaatggttgtgttagagatgtggatgagattaattt |
2534794 |
T |
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| Q |
301 |
gtgtcaagttggtgttagagctttgggttcttatccacttggatctaatgaaaagggt |
358 |
Q |
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| T |
2534793 |
gtgtcaagttggtgttagagctttgggttcttatccacttggatctaatgaaaagggt |
2534736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2538486 - 2538147
Alignment:
| Q |
1 |
tgacacaaacgcaacacacatagcaagtggtgatttgagaatactgcatccagtgttccagatatatggccactgccgggcattctccggccccatcgtt |
100 |
Q |
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||||||||||||||||||| || ||| |||||||||||| ||||| |||||||||||||||| ||||| || | | ||||||||| || ||| ||| |
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| T |
2538486 |
tgacacaaacgcaacacacttaacaaatggtgatttgaggatacttcatccagtgttccagaagtatggacagtctcaggcattctcggggcccgctgtt |
2538387 |
T |
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| Q |
101 |
actgtaaaagtgtttgaagacaatgtcttggcaagagaactccttgaaactaaaggagaaggaagagtcttggttattgatcgaggaggaagtatgaggt |
200 |
Q |
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|||||||||||||||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||| |||||| ||||| |||||||||| ||||||| |
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| T |
2538386 |
actgtaaaagtgtttgaagataatgtgttggtaagagaacttcttgaaacaaaaggagaaggaagagttttggttgttgatggaggaggaagcatgaggt |
2538287 |
T |
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| Q |
201 |
gtgctcttgttggagggaacttggtgcagttggcacaaaatacggggtggtccggaattattgtgaatggttgtgttagagatgtggatgagattaattt |
300 |
Q |
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| T |
2538286 |
gtgctcttgttggagggaatttggtgcagttggcacaaaacaaggggtggtctgggattgttgtgaatggttgtattagagatgtggatgagattaattt |
2538187 |
T |
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| Q |
301 |
gtgtcaagttggtgttagagctttgggttcttatccactt |
340 |
Q |
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|||||| ||||||||||||||||||| |||| |||||||| |
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| T |
2538186 |
gtgtcaggttggtgttagagctttggcttctcatccactt |
2538147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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