View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10445_high_7 (Length: 260)
Name: NF10445_high_7
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 531276 - 531519
Alignment:
| Q |
13 |
gacatcacagcagaacagttcagctcctacttttgaccaactttcaccttccttttcaaattcatctggaccatttttcgaaccaactggtcaacttact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
531276 |
gacatcacagcagaacagttcagctcctacttttgaccaactttcaccttccttttcaaattcatctggaccattttccgaaccaactggtcaacttact |
531375 |
T |
|
| Q |
113 |
cctcatcaaggtttctcatgtgcaaccaatcaacctgcacaaacccttccaagtggtcaattttcccagccaggcttttcagcttctaatccatcnnnnn |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
531376 |
cctcgtcaaggtttctcatgtgcaaccaatcaacctgcacaaacccttccaagtggtcaattttcccagccaggcttttcagcgtctaatccatcttttt |
531475 |
T |
|
| Q |
213 |
nncagcctttaccagtccatatgcacaacaaccctttgcttctc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
531476 |
ttcagcctttaccagtccatatgcacaacaaccctttccttctc |
531519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 633099 - 632859
Alignment:
| Q |
14 |
acatcacagcagaacagttcagctcctacttttgaccaactttcaccttccttttcaaattcatctggaccatttttcgaaccaactggtcaacttactc |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
633099 |
acatcacagcagaacagttcagctccttcttttggccaaccttcaccttccttttcaacttcatctggatcattttccgaaccaactggtcaacttactc |
633000 |
T |
|
| Q |
114 |
ctcatcaaggtttctcatgtgcaaccaatcaacctgcacaaacccttccaagtggtcaattttcccagccaggcttttcagcttctaatccatcnnnnnn |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
632999 |
ttcatcaaggtttctcagctgcaaccaatcaacctgcacaaacccttccaactggtcaattttcgcagccaggcttttcagcttctaattcatc--tttt |
632902 |
T |
|
| Q |
214 |
ncagcctttaccagtccatatgcacaacaaccctttgcttctc |
256 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
632901 |
tcagcctctaccagtccatatgcacagcaaccttttccttctc |
632859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University