View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10445_low_1 (Length: 494)
Name: NF10445_low_1
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 48254179 - 48254654
Alignment:
| Q |
1 |
cttgcttgcagcttctgtagcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttttccatttatctccttt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254179 |
cttgcttgcagcttctgtggcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttttccatttatctccttt |
48254278 |
T |
|
| Q |
101 |
gtatttccacaatacactttaggatcgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacctgtttcatgtaagaaac |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48254279 |
gtatttccacaatacactttaggattgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacctgtttcatgtaacaaac |
48254378 |
T |
|
| Q |
201 |
nnnnnnncatttaagggatcattacgattaacaatgttcttttaaaacaagccaagagataagtgtttgaaccatgagaagtaggatgccggaaaagctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254379 |
aaaaaaacatttaagggatcattacgattaacaatgttcttttaaaacaagccaaaagataagtgtttgaaccatgagaagtaggatgccggaaaagctc |
48254478 |
T |
|
| Q |
301 |
caacagaacggtgtaggtatcgacatatatgacagaagcatctgagagactttctctggtttgtttcaatgactctttcaacattttgttatagtccact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254479 |
caacagaacggtgtaggtatcgacatatatgacagaagcatctgagatactttctctggtttgtttcaatgactctttcaacattttgttatagtccact |
48254578 |
T |
|
| Q |
401 |
actgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatg |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254579 |
actgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatg |
48254654 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 462
Target Start/End: Complemental strand, 10499723 - 10499596
Alignment:
| Q |
335 |
gaagcatctgagagactttctctggtttgtttcaatgactctttcaacattttgttatagtccactactgcattgttgtaagaaaccatgcatccaaatt |
434 |
Q |
| |
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||||||||||| | ||||| ||| ||||| |||||| ||||||||||| |||||| || || |||| |||||||| |||| || ||||||||| || |
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| T |
10499723 |
gaagcatctgataaactttttctagtttgagtcaatgtctctttcaacaatttgttgtaatcatctacagcattgttataagtaattatgcatccatgtt |
10499624 |
T |
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| Q |
435 |
cgtcaaggtccgaactattatgaggaag |
462 |
Q |
| |
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| || | ||| |||||| |||||||||| |
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| T |
10499623 |
catctaagtcagaactagtatgaggaag |
10499596 |
T |
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