View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10445_low_13 (Length: 248)

Name: NF10445_low_13
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10445_low_13
NF10445_low_13
[»] chr3 (4 HSPs)
chr3 (1-60)||(2642987-2643046)
chr3 (1-59)||(2503555-2503613)
chr3 (15-49)||(2632027-2632061)
chr3 (1-46)||(7332589-7332634)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2643046 - 2642987
Alignment:
Q  1 tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2643046 tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacg 2642987  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2503555 - 2503613
Alignment:
Q  1 tacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatac 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2503555 tacacacttctctggtatgatagcgttgattactgcaaattaataattaaagtatatac 2503613  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 2632027 - 2632061
Alignment:
Q  15 gtatgatagtgttgattactgcaaattaataatta 49  Q
    |||||||||||||||||||||||||||||||||||    
T  2632027 gtatgatagtgttgattactgcaaattaataatta 2632061  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7332634 - 7332589
Alignment:
Q  1 tacacacttctctggtatgatagtgttgattactgcaaattaataa 46  Q
    |||||||||||||||||||||||   |||||| |||||||||||||    
T  7332634 tacacacttctctggtatgatagcagtgattattgcaaattaataa 7332589  T

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