View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10445_low_14 (Length: 244)
Name: NF10445_low_14
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 22902789 - 22902577
Alignment:
| Q |
19 |
acacagggttgttgacagatgcatttgagacggtttttaggcttaacatgggtggtccaagtgtttcctctagtgttgacccgcttcatcgaacttgggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22902789 |
acacagggttgttgacagatgcatttgagacggtttttaggcttaacatgggtggtccaagtgtttcctctagtgttgacccgcttcatcgaacttgggt |
22902690 |
T |
|
| Q |
119 |
tccagatacaagcttcctgatacaacctaaccttgctactaatttttcaagtataggtgctgttaaatatgcaaaggggggtgcaacagaaaatattgct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22902689 |
tccagatacaagcttcctgatacaacctaaccttgctactaatttttcaagtataggtgctgttaaatatgcaaaggggggtgcaacagaaaatattgct |
22902590 |
T |
|
| Q |
219 |
ccacctagtgtct |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22902589 |
ccacctagtgtct |
22902577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 22954457 - 22954245
Alignment:
| Q |
19 |
acacagggttgttgacagatgcatttgagacggtttttaggcttaacatgggtggtccaagtgtttcctctagtgttgacccgcttcatcgaacttgggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22954457 |
acacagggttgttgacagatgcatttgagacggtttttaggcttaacatgggtggtccaagtgtttcctctagtgttgacccgcttcatcgaacttgggt |
22954358 |
T |
|
| Q |
119 |
tccagatacaagcttcctgatacaacctaaccttgctactaatttttcaagtataggtgctgttaaatatgcaaaggggggtgcaacagaaaatattgct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22954357 |
tccagatacaagcttcctgatacaacctaaccttgctactaatttttcaagtataggtgctgttaaatatgcaaaggggggtgcaacagaaaatattgct |
22954258 |
T |
|
| Q |
219 |
ccacctagtgtct |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22954257 |
ccacctagtgtct |
22954245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University