View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10445_low_19 (Length: 216)

Name: NF10445_low_19
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10445_low_19
NF10445_low_19
[»] chr6 (4 HSPs)
chr6 (120-202)||(164282-164364)
chr6 (79-126)||(164392-164439)
chr6 (33-80)||(31665652-31665699)
chr6 (30-74)||(15296151-15296195)
[»] chr4 (4 HSPs)
chr4 (120-202)||(18208045-18208127)
chr4 (79-126)||(18207970-18208017)
chr4 (31-82)||(12094876-12094927)
chr4 (35-80)||(4883609-4883654)
[»] chr1 (4 HSPs)
chr1 (30-82)||(24819181-24819233)
chr1 (31-82)||(15700719-15700770)
chr1 (33-80)||(22964007-22964054)
chr1 (29-80)||(44508601-44508652)
[»] chr2 (2 HSPs)
chr2 (31-80)||(32281486-32281535)
chr2 (33-80)||(28926075-28926122)
[»] chr5 (4 HSPs)
chr5 (30-83)||(37337320-37337373)
chr5 (17-80)||(22482596-22482658)
chr5 (30-80)||(26110688-26110738)
chr5 (35-81)||(36434662-36434708)
[»] chr8 (3 HSPs)
chr8 (33-80)||(42315342-42315389)
chr8 (33-80)||(45244308-45244355)
chr8 (30-80)||(23828343-23828393)
[»] chr3 (2 HSPs)
chr3 (33-80)||(1529165-1529212)
chr3 (33-80)||(49235500-49235547)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 164364 - 164282
Alignment:
Q  120 ccaactacacatattcaatgatgtatatttcccgtgcagcaactactacccaaacagcaattactaatgcatctaatctctgc 202  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||||| |||||||||||||||||| |||||||||||    
T  164364 ccaactacacatattcaatgatgtatattttccattgagcaactactacccatacagcaattactaatgcacctaatctctgc 164282  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 164439 - 164392
Alignment:
Q  79 attaatgcatatgttcaaattcaaatttcccccaaaacactccaacta 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  164439 attagtgcatatgttcaaattcaaatttcccccaaaacactccaacta 164392  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 31665652 - 31665699
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  31665652 aattagggttactaatagcttgaccaaacaagctttagtaagaaagat 31665699  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 15296195 - 15296151
Alignment:
Q  30 aaaaattagggttagtaatagcttgaccaaacaaactttagtaag 74  Q
    |||||||||||||| | |||||||||| |||||| ||||||||||    
T  15296195 aaaaattagggttacttatagcttgacaaaacaagctttagtaag 15296151  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 18208045 - 18208127
Alignment:
Q  120 ccaactacacatattcaatgatgtatatttcccgtgcagcaactactacccaaacagcaattactaatgcatctaatctctgc 202  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||||| |||||||||||||||||| |||||||||||    
T  18208045 ccaactacacatattcaatgatgtatattttccattgagcaactactacccatacagcaattactaatgcacctaatctctgc 18208127  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 18207970 - 18208017
Alignment:
Q  79 attaatgcatatgttcaaattcaaatttcccccaaaacactccaacta 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  18207970 attagtgcatatgttcaaattcaaatttcccccaaaacactccaacta 18208017  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 12094876 - 12094927
Alignment:
Q  31 aaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagatta 82  Q
    ||||||||||||  ||||||||||||||||||| |||||||||| |||||||    
T  12094876 aaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagatta 12094927  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 4883609 - 4883654
Alignment:
Q  35 ttagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||    
T  4883609 ttagggttaggaatagcttgacctaacaagctttagtaagtaagat 4883654  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 24819233 - 24819181
Alignment:
Q  30 aaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagatta 82  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24819233 aaaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagatta 24819181  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 15700770 - 15700719
Alignment:
Q  31 aaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagatta 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  15700770 aaaattagggttactaatagcttgaccaaacaaactttagtaagaaagatta 15700719  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 22964054 - 22964007
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||||||    
T  22964054 aattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 44508652 - 44508601
Alignment:
Q  29 aaaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||||||||||||||||||| || |||| |||||| ||| |||||    
T  44508652 aaaaaattagggttagtaatagcttgatcagacaagctttagaaagaaagat 44508601  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 32281535 - 32281486
Alignment:
Q  31 aaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  32281535 aaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 32281486  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 28926122 - 28926075
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||| |||||||||||||| |||| |||||||||| |||||    
T  28926122 aattagggttactaatagcttgaccagacaagctttagtaagaaagat 28926075  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 37337373 - 37337320
Alignment:
Q  30 aaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagattaa 83  Q
    |||||||||||||| | ||||||||||||||||| |||||||||| ||||||||    
T  37337373 aaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagattaa 37337320  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 22482596 - 22482658
Alignment:
Q  17 aaaaattagggtaaaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||||||||||||||| | || ||| ||||||||| |||| ||||||||| ||||||    
T  22482596 aaaaattagggtaaaaaattaggttgag-aattgcttgaccagacaagctttagtaaataagat 22482658  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 26110738 - 26110688
Alignment:
Q  30 aaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    |||||||||||||| | |||||||||||||||||  ||||||||| |||||    
T  26110738 aaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagat 26110688  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 36434662 - 36434708
Alignment:
Q  35 ttagggttagtaatagcttgaccaaacaaactttagtaagtaagatt 81  Q
    ||||||||||   ||||||||||| ||||||||||||||||||||||    
T  36434662 ttagggttagggttagcttgaccagacaaactttagtaagtaagatt 36434708  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 42315389 - 42315342
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  42315389 aattagggttactaatagcttgaccaaacaagctttagtaagaaagat 42315342  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 45244308 - 45244355
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  45244308 aattagggttactaatagcttgaccagacaaactttagtaagaaagat 45244355  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 23828393 - 23828343
Alignment:
Q  30 aaaaattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    |||||||||||||| ||||||||||||||||||| || ||||||| |||||    
T  23828393 aaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 1529212 - 1529165
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  1529212 aattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 49235500 - 49235547
Alignment:
Q  33 aattagggttagtaatagcttgaccaaacaaactttagtaagtaagat 80  Q
    ||||||||| | | |||||||||||||||||||||||||||| |||||    
T  49235500 aattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

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