View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10445_low_3 (Length: 466)

Name: NF10445_low_3
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10445_low_3
NF10445_low_3
[»] chr3 (8 HSPs)
chr3 (158-421)||(2643327-2643583)
chr3 (157-456)||(2503276-2503568)
chr3 (79-323)||(7332787-7333020)
chr3 (289-424)||(7332644-7332778)
chr3 (15-78)||(2651010-2651072)
chr3 (256-379)||(2494056-2494178)
chr3 (420-456)||(2643033-2643069)
chr3 (400-444)||(7439023-7439067)
[»] chr6 (1 HSPs)
chr6 (198-334)||(18756428-18756562)
[»] scaffold0019 (1 HSPs)
scaffold0019 (291-375)||(566-648)
[»] chr5 (3 HSPs)
chr5 (241-300)||(20298208-20298267)
chr5 (241-302)||(20303261-20303322)
chr5 (241-302)||(20307674-20307735)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 158 - 421
Target Start/End: Complemental strand, 2643583 - 2643327
Alignment:
Q  158 gcttctattttatgatgtatggttacatttattaaatgactaatgaggattctttaccaattagccttttattttctttgtggtgatgatagttttgcaa 257  Q
    |||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||| |||||||||| ||||||||||||||| | |||    
T  2643583 gcttctattttatgatgtatggttacatttatcaaatga-------ggattctttaccaattagcctattattttcttggtggtgatgatagttgtccaa 2643491  T
Q  258 ttatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatatc 357  Q
    |||||||||||||||||  |||||||| || ||| || ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  2643490 ttatagggtttttcatgtaacctaggttctttctatcctctttttgaacaatataaaatcaactagttatctagagatcaagagagaacagactcatatc 2643391  T
Q  358 ttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcagtgtttgttatta 421  Q
    |||||||||| |||||||||||  || ||||||||| |||||||||||||||||||||||||||    
T  2643390 ttgaaaacttcagttttcccatgacagtttgggatagcatggtcattctcagtgtttgttatta 2643327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 157 - 456
Target Start/End: Original strand, 2503276 - 2503568
Alignment:
Q  157 tgcttctattttatgatgtatggttacatttattaaatgactaatgaggattctttaccaattagccttttattttctttgtggtgatgatagttttgca 256  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||| ||||    
T  2503276 tgcttctatgttatgatgtatggttacatttatcaaatgactaatgaggattctttaccaattagcctttc-----cttggtggtgatgatagttgtgca 2503370  T
Q  257 attatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatat 356  Q
     |||||| ||| |||||  |||||||||||| |||||| |||||||||||||| |||||||||||  |||||||||||  ||||||||||||||| |||     
T  2503371 gttatagagttgttcattgtacctaggtcctatctttcctctttttgaacgatttaaaatcaact-cttatctagagattgagagagaacagactcataa 2503469  T
Q  357 cttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcagtgtttgttattagcttaattggcttaatttctttacacacttctctg 456  Q
    ||||||||||| |||||||| ||  ||  ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  2503470 cttgaaaacttcagttttccaatgacaggttgggatatcatgatcattctc-gtgtttgttattagcttagttggcttaattgctttacacacttctctg 2503568  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 79 - 323
Target Start/End: Complemental strand, 7333020 - 7332787
Alignment:
Q  79 tgtgacgaggattatattttgctgcacagtggaatttattcacgaacatgatctaattctcgcagtgcttctattttatgcttctattttatgatgtatg 178  Q
    |||||||||||||||| |||  |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||          ||| | ||||    
T  7333020 tgtgacgaggattatactttattgcacaatggaatttattcatgaacatgatctaattcttgcagtgcttctattttatg----------atg-tatatg 7332932  T
Q  179 gttacatttattaaatgactaatgaggattctttaccaattagccttttattttctttg-------tggtgatgatagttttgcaattatagggtttttc 271  Q
    |||||||||||       | ||||||||||||||||||||||||||||| ||||||| |       |||||||||||||| |||||||||| |  | |||    
T  7332931 gttacatttat-------cgaatgaggattctttaccaattagccttttcttttcttggtggtaaatggtgatgatagttgtgcaattataagaatgttc 7332839  T
Q  272 atgatacctaggtcctctctttcttctttttgaacgatataaaatcaactag 323  Q
    |||||||||||||||| |||||| || |||| ||| ||||||||| ||||||    
T  7332838 atgatacctaggtcctttctttcctcgttttcaacaatataaaattaactag 7332787  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 7332778 - 7332644
Alignment:
Q  289 tctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttg 388  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||  ||||||||||||||| || ||||| |||||| || ||||||||   | ||||    
T  7332778 tctttcctctttttgaacgatataaaatcaactaattttctagagattgagagagaacagactcatttcttg-aaacttcagctttcccatgatagtttg 7332680  T
Q  389 ggatatcatggtcattctcagtgtttgttattagct 424  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  7332679 ggatagcatggtcattctcagtgtttgttatcagct 7332644  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 2651072 - 2651010
Alignment:
Q  15 taaccaccatggtaagtcaacacaacttatcctttcaccgattttgatagacttgatatcgttg 78  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  2651072 taaccaccaatgtaagtcaacaca-cttatcctttcaccgattttgatagacttgatattgttg 2651010  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 379
Target Start/End: Original strand, 2494056 - 2494178
Alignment:
Q  256 aattatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaata 355  Q
    |||||||||||| ||| ||||  | ||||||| |||||| ||| |||||| ||| | ||||||| ||| ||||||||||  | ||||||| | | | |||    
T  2494056 aattatagggttgttcttgatgtc-aggtcctttctttcctctgtttgaaagatcttaaatcaattagctatctagagattgggagagaatatagtcata 2494154  T
Q  356 tcttgaaaacttaagttttcccat 379  Q
    |||||||||||| |||||||||||    
T  2494155 tcttgaaaacttcagttttcccat 2494178  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 2643069 - 2643033
Alignment:
Q  420 tagcttaattggcttaatttctttacacacttctctg 456  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2643069 tagcttaattgacttaatttctttacacacttctctg 2643033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 7439067 - 7439023
Alignment:
Q  400 tcattctcagtgtttgttattagcttaattggcttaatttcttta 444  Q
    |||||||| |||||||||||||||||||||| | ||||| |||||    
T  7439067 tcattctctgtgtttgttattagcttaattgacataattgcttta 7439023  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 18756428 - 18756562
Alignment:
Q  198 taatgaggattctttaccaattagccttttatttt-ctttgtggtgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttctt 296  Q
    |||||||| |||| |||||||||||||||| |||| ||| ||  ||||||||||| || |||||||| |||   ||| ||  |||||| || | |||| |    
T  18756428 taatgaggcttctctaccaattagccttttctttttcttggtactgatgatagttgtgaaattatagagtt---cataatgtctaggttctttgtttcct 18756524  T
Q  297 ctttttgaacgatataaaatcaactagttatctagaga 334  Q
    ||||||||| ||||||||||||  ||||||||||||||    
T  18756525 ctttttgaaagatataaaatcacttagttatctagaga 18756562  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 566 - 648
Alignment:
Q  291 tttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttc 375  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||  | ||||||| ||  | ||||||||||||||| |||||||    
T  566 tttcctctttttgaaagatataaaatcaattagttatctagagattgtgagagaatag--tcatatcttgaaaacttcagttttc 648  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 20298208 - 20298267
Alignment:
Q  241 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttt 300  Q
    ||||||||||| || |||||||||||||||||||||| ||| ||||| |||||| |||||    
T  20298208 tgatgatagttgtgaaattatagggtttttcatgatatctaagtcctttctttcctcttt 20298267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 20303261 - 20303322
Alignment:
Q  241 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttttt 302  Q
    ||||||||||| |  |||||||||||||||| ||||| ||| ||||| |||||| |||||||    
T  20303261 tgatgatagttgtaaaattatagggtttttcttgatatctaagtcctttctttcctcttttt 20303322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 20307674 - 20307735
Alignment:
Q  241 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttttt 302  Q
    ||||||||||| |  |||||||||||||||| ||||| ||| ||||| |||||| |||||||    
T  20307674 tgatgatagttgtaaaattatagggtttttcttgatatctaagtcctttctttcctcttttt 20307735  T

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