View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10445_low_5 (Length: 349)
Name: NF10445_low_5
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_low_5 |
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| [»] scaffold0651 (3 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 3889 - 4212
Alignment:
| Q |
17 |
catggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgct |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3889 |
catgatttctataattcctttttcaaggggtctctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatggctttccatgct |
3988 |
T |
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| Q |
117 |
ggattatcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaa |
216 |
Q |
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| T |
3989 |
ggattatcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaa |
4088 |
T |
|
| Q |
217 |
tggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||| |
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| T |
4089 |
tggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagt |
4188 |
T |
|
| Q |
317 |
gatgaatttatgcttgagacccct |
340 |
Q |
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|| ||| || |||||||| |||| |
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| T |
4189 |
gaggaacctaagcttgagagccct |
4212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 1730 - 1610
Alignment:
| Q |
223 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
322 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1730 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
1631 |
T |
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| Q |
323 |
tttatgcttgagacccctttg |
343 |
Q |
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||||||||||||||||||||| |
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| T |
1630 |
tttatgcttgagacccctttg |
1610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 1900 - 1799
Alignment:
| Q |
65 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagt |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| || |
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| T |
1900 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaaaatatcctctttcttatgt |
1801 |
T |
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| Q |
165 |
at |
166 |
Q |
| |
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|| |
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| T |
1800 |
at |
1799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 31319781 - 31319458
Alignment:
| Q |
17 |
catggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgct |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31319781 |
catgatttctataattcctttttcaaggggtctctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatggctttccatgct |
31319682 |
T |
|
| Q |
117 |
ggattatcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319681 |
ggattatcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaa |
31319582 |
T |
|
| Q |
217 |
tggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||| |
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| T |
31319581 |
tggcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagt |
31319482 |
T |
|
| Q |
317 |
gatgaatttatgcttgagacccct |
340 |
Q |
| |
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|| ||| || |||||||| |||| |
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| T |
31319481 |
gaggaacctaagcttgagagccct |
31319458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 31332034 - 31331885
Alignment:
| Q |
17 |
catggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgct |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332034 |
catgatttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgct |
31331935 |
T |
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| Q |
117 |
ggattatcaccattttcatcaacctacaatatgtccgctttcttaagtat |
166 |
Q |
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||||||||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
31331934 |
ggattatcaccattttcatcaacctacaaaatatcctctttcttatgtat |
31331885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 31331816 - 31331696
Alignment:
| Q |
223 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
322 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31331816 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
31331717 |
T |
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| Q |
323 |
tttatgcttgagacccctttg |
343 |
Q |
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||||||||||||||||||||| |
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| T |
31331716 |
tttatgcttgagacccctttg |
31331696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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