View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10445_low_6 (Length: 345)
Name: NF10445_low_6
Description: NF10445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10445_low_6 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 46342 - 46561
Alignment:
| Q |
1 |
tcgagcatttccttgagagatgaaatgtgagagagaatcgttcctgaatcttccattgttgtgttgttctgttacgcaatgcgacaaacgctttgaatga |
100 |
Q |
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| T |
46342 |
tcgagcatttccttgagagatgaaatgtgagagagaatcgttcctgaatcttccattgttgtgttgttctgttacgcaatgcgacaaacgctttgaatga |
46441 |
T |
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| Q |
101 |
atgagagttaccgccacatttcaattttcaacagttcagtttcatgtgtcccgcgcgtgttgatttcttagtttgggcccccactctctcaaa--tattt |
198 |
Q |
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| T |
46442 |
atgagagttaccgccacatttcaattttcaacagttcagtatcatgtgtcccgcgcgtgttgatttcttagattggg--cccactctcttaaatgttttt |
46539 |
T |
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| Q |
199 |
ggggcttttttaatagtttctt |
220 |
Q |
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||| |||||||||||||||||| |
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| T |
46540 |
gggccttttttaatagtttctt |
46561 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 33819738 - 33819674
Alignment:
| Q |
263 |
gaaggggttgggagcttgtagtacatatgtagcagagttttggagggtgttcgaaggtttgaagt |
327 |
Q |
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| T |
33819738 |
gaaggggttgggagcttgtagtgcatgtgttgcagagctttggagggtgttagaaggtttgaagt |
33819674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 43337282 - 43337343
Alignment:
| Q |
264 |
aaggggttgggagcttgtagtacatatgtagcagagttttggagggtgttcgaaggtttgaa |
325 |
Q |
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| T |
43337282 |
aaggggttgggagcttgtagtgcatatgttgcagagctttggggggtgtttgaaggtttgaa |
43337343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 48875718 - 48875765
Alignment:
| Q |
270 |
ttgggagcttgtagtacatatgtagcagagttttggagggtgttcgaa |
317 |
Q |
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| T |
48875718 |
ttgggagcttgtagtgcatatgtcgcagagctttggcgggtgttcgaa |
48875765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 10018667 - 10018730
Alignment:
| Q |
263 |
gaaggggttgggagcttgtagtacatatgtagcagagttttggagggtgttcgaaggtttgaagt |
327 |
Q |
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| T |
10018667 |
gaaggggttgggagcttgtagtacatatgttgccgagctttgg-gggtgttcgaaagtttgaagt |
10018730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 42006285 - 42006221
Alignment:
| Q |
263 |
gaaggggttgggagcttgtagtacatatgtagcagagttttggagggtgttcgaaggtttgaagt |
327 |
Q |
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|||||||||||||| ||||||| ||||||| ||| || ||| | |||||| |||||||||||||| |
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| T |
42006285 |
gaaggggttgggagtttgtagtgcatatgttgcatagctttagggggtgtacgaaggtttgaagt |
42006221 |
T |
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