View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10446_high_3 (Length: 514)
Name: NF10446_high_3
Description: NF10446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10446_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Complemental strand, 1125613 - 1125127
Alignment:
| Q |
20 |
agattttgagatcttgtcttcaaccaagaggaaaaccacccttttaattttctcatctccaacgtcaaaatacacaacagatgagtacatgcccatgtct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1125613 |
agattttgagatcttgtcttcaaccaagaggaaaaccaccctttcaattttctcatctccaacgtcaaaatacacaacagatgagtacatgcccatgtct |
1125514 |
T |
|
| Q |
120 |
ttggtcttgcaagacagccatatcttcaagatctcaccaggctgaagcatcctgtcctccactctgaaagattctataaagctctctgcatttgagtttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1125513 |
ttggtcttgcaagacagccatatcttcaagatctcaccaggctgaagcatcctgtcctccactctgaaagattctataaagctctctgcatttgagtttg |
1125414 |
T |
|
| Q |
220 |
ccgggggaggctccgtgagagaaagagtgaaagagtccggaggatttgaggcaaaaatatgaacactccacaggtccactggttcctcagtagtattatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1125413 |
ccgggggaggctccgtgagagaaagagtgaaagagtccggaggatttgaggcaaaaatatgaacactccacaggtccactggttcctcagtagtattatt |
1125314 |
T |
|
| Q |
320 |
aatggttattaactccacggcagtatctccaacagatactgattgaggcttcccattcttaaaagcaaacgggacagatacgattactggagccccgtca |
419 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1125313 |
aatggttattaactccgcggcagtatctccaacagatactgattgaggcttcccattcttaaaagcaaacgggacagatacgattactggagccccgtca |
1125214 |
T |
|
| Q |
420 |
tcagcaacataactgcaaacagatctctcttcctcgaaatctagaaatccgatttcagcctttt-ccctatgacagagcattcatct |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1125213 |
tcagcaacataactgcaaacagatctctcttcctcgaaatctagaaatccgatttcagccttttcccctatgacagagcattcatct |
1125127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 22977008 - 22977494
Alignment:
| Q |
20 |
agattttgagatcttgtcttcaaccaagaggaaaaccacccttttaattttctcatctccaacgtcaaaatacacaacagatgagtacatgcccatgtct |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977008 |
agattttgagatcttgtcttcaaccaagaggaaaaccaccctttcaattttctcgtctccaacgtcaaaatacacaacagatgagtacatgcccatgtct |
22977107 |
T |
|
| Q |
120 |
ttggtcttgcaagacagccatatcttcaagatctcaccaggctgaagcatcctgtcctccactctgaaagattctataaagctctctgcatttgagtttg |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977108 |
ttggtcttgcaagacagccatatcttcaagatctcgccaggctgaagcatcctgtcctccactctgaaagattctataaagctctctgcatttgagtttg |
22977207 |
T |
|
| Q |
220 |
ccgggggaggctccgtgagagaaagagtgaaagagtccggaggatttgaggcaaaaatatgaacactccacaggtccactggttcctcagtagtattatt |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977208 |
ccggaggaggctccgtgagagaaagagtgaaagagtccggaggatttgaggcaaaaatatgaacactccacaggtccactggttcctcagtagtattatt |
22977307 |
T |
|
| Q |
320 |
aatggttattaactccacggcagtatctccaacagatactgattgaggcttcccattcttaaaagcaaacgggacagatacgattactggagccccgtca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977308 |
aatggttattaactccacggcagtatctccaacagatactgattgaggcttcccattcttaaaagcaaacgggacagatacgattactggagccccgtca |
22977407 |
T |
|
| Q |
420 |
tcagcaacataactgcaaacagatctctcttcctcgaaatctagaaatccgatttcagcctttt-ccctatgacagagcattcatct |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22977408 |
tcagcaacataactgcaaacagatctctcttcctcgaaatctagaaatccgatttcagccttttcccctatgacagagcattcatct |
22977494 |
T |
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