View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10446_low_2 (Length: 596)
Name: NF10446_low_2
Description: NF10446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10446_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 21 - 577
Target Start/End: Original strand, 4996385 - 4996941
Alignment:
| Q |
21 |
caagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattct |
120 |
Q |
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| T |
4996385 |
caagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattct |
4996484 |
T |
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| Q |
121 |
tattgctttcaagtattcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcat |
220 |
Q |
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| T |
4996485 |
tattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcat |
4996584 |
T |
|
| Q |
221 |
tgattgcacacttttctccataataatcccnnnnnnnnncaagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtct |
320 |
Q |
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| T |
4996585 |
tgattgcacacttttctccataataatcccaaaaaat--caagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtct |
4996682 |
T |
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| Q |
321 |
ctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgacgcatactaccaaacttcagcatcttcaactat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
4996683 |
ctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgactcatactaccaaactttagcatcttcaactat |
4996782 |
T |
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| Q |
421 |
acaaatacaaaattaacaccccttc-aaaaaacatgatcattctcatcctctcacacacactacc--aaaaattcacaacatgaaaaaactcattttcat |
517 |
Q |
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|||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4996783 |
acaaatac-aaattaacaccccttcaaaaaaacacgatcattctcatcctctcacacacactaccaaaaaaattcacaacatgaaaaaactcattttcat |
4996881 |
T |
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| Q |
518 |
tcttctcttttcactactatgttcaaatggaaccaccttttcactctcaagagactatga |
577 |
Q |
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| T |
4996882 |
tcttctcttttcactagtatgttcaaatggaaccaccttttcactctcaagagactatga |
4996941 |
T |
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