View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10446_low_4 (Length: 450)
Name: NF10446_low_4
Description: NF10446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10446_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 2719646 - 2719223
Alignment:
| Q |
15 |
agagagacaaaaaggtgattttattgattcatttacaaagagaaaatgcccttccagattatttcttctcatcccctaatat----annnnnnnnnnact |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | ||| |
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| T |
2719646 |
agagagacaaaaaggtgattttattgattcatttacaaacagaaaatgccctttcagattatttcttctcatcccataatatttttattttttttttact |
2719547 |
T |
|
| Q |
111 |
aaatgacactcacaaagaaaaggcccactatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtaga |
210 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2719546 |
aaatggcactcacaaagaaaaggcccaccatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtaga |
2719447 |
T |
|
| Q |
211 |
gaaaataaaagagatggttagaagttacgtgggtaacactattatatagctgagaaaaagtaaaatatagaactccctcgccacttacctaaaccaacat |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2719446 |
gaaaataaaagagatggttagaagttacgcgggtaacactattatatagctgagaaaaagtaaaatatagaactccctcgccacttacctaaaccaacat |
2719347 |
T |
|
| Q |
311 |
gatttgtatgaacttaagtctaagtttatattgaaaggtagtttggtagaataggaacacatgaactttatatttgtatttgcaacatattaaaacaaaa |
410 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2719346 |
gatttgtatgaacttaagtctaagtttataatgaaaggtagtttggtagaataggaacacatgaactttatatttgtatttgcaacatattaaaacaaaa |
2719247 |
T |
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| Q |
411 |
tacaaacctacaaagggttgttgg |
434 |
Q |
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|||||||||||||||||||||||| |
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| T |
2719246 |
tacaaacctacaaagggttgttgg |
2719223 |
T |
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