View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10446_low_7 (Length: 318)
Name: NF10446_low_7
Description: NF10446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10446_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 4996918 - 4997221
Alignment:
| Q |
1 |
cttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996918 |
cttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagat |
4997017 |
T |
|
| Q |
101 |
cataatccttgtaactggagaggcataacctgcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997018 |
cataatccttgtaactggagaggcataacctgcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccat |
4997117 |
T |
|
| Q |
201 |
ctaatttctgtcatattccaacactccaaaatctttcacttgctaccaattttcttggtaatgctatttcctcacattccatgctaccctgctcccacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997118 |
ctaatttctgtcatattccaacactccaaaatctttcacttgctacgaattttcttggtaatgctatttcctcacattccatgctaccctgctcccacct |
4997217 |
T |
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| Q |
301 |
tcat |
304 |
Q |
| |
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|||| |
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| T |
4997218 |
tcat |
4997221 |
T |
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