View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_1 (Length: 548)
Name: NF10447_high_1
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 247 - 527
Target Start/End: Original strand, 51863524 - 51863804
Alignment:
| Q |
247 |
ggatgttgctaataatgttactcaaggtccttgtagagcattgcttggtgatctcactggtaaatttttctcctccttacgaatattatgatctgaaata |
346 |
Q |
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| T |
51863524 |
ggatgttgctaataatgttactcaaggtccttgtagagcattgcttggtgatctcactggtaaatttttctcctccttatgaatattatgatctgaaata |
51863623 |
T |
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| Q |
347 |
atttgcaattgtttcggtgtctagttgagtaaacttgagttcatttcccgagtttactatagttccagtttataactgaggcaattcgaaattgatgcct |
446 |
Q |
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| T |
51863624 |
atttgcaattgtttcggtgtctagttgagtaaacttgagttcatttccggagtttactatagttccagtttataactgaggcaattcgaaattgatgcct |
51863723 |
T |
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| Q |
447 |
aaactcgtggaattgtccgattggacaagttaacaaacccttcgtcgtcagatgttaggtaaggttggttatctgcaatct |
527 |
Q |
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| T |
51863724 |
aaactcgtggaattgtccgattggacaagttaacaaacccttcgtcgtcagatgttaggtaaggttggttatctgcaatct |
51863804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 51863296 - 51863497
Alignment:
| Q |
19 |
atgtgggcctctttctgggcttcttgttcaacccttggttgggcatttgagtgatcggtgtacgagtcgatttgggagaagaagaccgtttatactcgga |
118 |
Q |
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| T |
51863296 |
atgtgggcctctttctgggcttcttgttcaacccttggttgggcatttgagtgatcggtgtacgagtcgatttgggagaagaagaccgtttatactcgga |
51863395 |
T |
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| Q |
119 |
ggagctgtttcgattgtgatttctgttcttattattggtcatgctgcggatttgggatggaaatttggtgataccaagaatcatcgccattctgctgtcg |
218 |
Q |
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| T |
51863396 |
ggagctgtttcgattgtgatttctgttcttattattggtcatgctgcggatttgggatggaaatttggtgataccaagaatcatcgccattctgctgtcg |
51863495 |
T |
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| Q |
219 |
cg |
220 |
Q |
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|| |
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| T |
51863496 |
cg |
51863497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 28520418 - 28520381
Alignment:
| Q |
248 |
gatgttgctaataatgttactcaaggtccttgtagagc |
285 |
Q |
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| T |
28520418 |
gatgttgctaataatgttactcaaggtccttgtagagc |
28520381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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