View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_12 (Length: 251)
Name: NF10447_high_12
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 8683050 - 8683269
Alignment:
| Q |
19 |
aactcttggcattacagttctgattccaactataattgttcctcaaatgggtggaggagatgtgagaaatatttctgatcaatttgtatttgcttttaat |
118 |
Q |
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| T |
8683050 |
aactcttggcattacagttctgattccaactataattgttcctcaaatgggtggaggagatgtgagaaatatttctgatcaatttgtatttgcttttaat |
8683149 |
T |
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| Q |
119 |
tttaagcaacttttataatagtattaatgaacaaaatggtttgattcaatgtaggctgagaagactagggtgatacagacacttctatttgtgtctggac |
218 |
Q |
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| T |
8683150 |
tttaagcaacttttataatagtattaatgaacaaaatggtttgattcaatgtaggctgagaagactagggtgatacagacacttctatttgtgtctggac |
8683249 |
T |
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| Q |
219 |
taagcacattttttcaatct |
238 |
Q |
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|||||||||||||||||||| |
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| T |
8683250 |
taagcacattttttcaatct |
8683269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 47579340 - 47579393
Alignment:
| Q |
20 |
actcttggcattacagttctgattccaactataattgttcctcaaatgggtgga |
73 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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| T |
47579340 |
actcttggcatgacagttttgattccaactatagttgttcctcaaatgggtgga |
47579393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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