View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10447_high_13 (Length: 250)

Name: NF10447_high_13
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10447_high_13
NF10447_high_13
[»] chr1 (31 HSPs)
chr1 (1-154)||(32260966-32261117)
chr1 (72-141)||(27916497-27916566)
chr1 (74-141)||(26332771-26332837)
chr1 (9-141)||(14352902-14353026)
chr1 (82-141)||(28279277-28279336)
chr1 (69-143)||(31047726-31047799)
chr1 (74-138)||(49959041-49959105)
chr1 (157-241)||(2393261-2393346)
chr1 (176-241)||(2401199-2401264)
chr1 (75-141)||(8349261-8349329)
chr1 (176-240)||(4144662-4144726)
chr1 (86-141)||(37990682-37990737)
chr1 (157-240)||(25134189-25134274)
chr1 (156-247)||(32261358-32261442)
chr1 (75-141)||(13127842-13127910)
chr1 (79-141)||(42922238-42922302)
chr1 (85-141)||(13785492-13785548)
chr1 (73-142)||(26520328-26520399)
chr1 (75-139)||(8347484-8347550)
chr1 (79-141)||(17186339-17186405)
chr1 (75-141)||(17318893-17318963)
chr1 (1-39)||(16561388-16561426)
chr1 (176-222)||(26613237-26613283)
chr1 (157-244)||(46783264-46783353)
chr1 (179-240)||(3091084-3091145)
chr1 (74-141)||(16226166-16226237)
chr1 (75-142)||(16428653-16428724)
chr1 (75-142)||(20291457-20291528)
chr1 (75-141)||(31489915-31489983)
chr1 (74-141)||(31735732-31735803)
chr1 (69-141)||(46783039-46783111)
[»] chr3 (29 HSPs)
chr3 (1-137)||(11072845-11072983)
chr3 (1-141)||(11066489-11066631)
chr3 (75-141)||(13419865-13419931)
chr3 (73-138)||(7768552-7768617)
chr3 (65-122)||(23941721-23941777)
chr3 (80-141)||(46966862-46966923)
chr3 (74-141)||(27420633-27420701)
chr3 (74-141)||(23637006-23637075)
chr3 (176-241)||(10897144-10897209)
chr3 (74-141)||(23633439-23633508)
chr3 (203-240)||(27761965-27762002)
chr3 (73-139)||(31151327-31151395)
chr3 (75-141)||(53597220-53597288)
chr3 (73-142)||(24177258-24177329)
chr3 (70-141)||(13893359-13893429)
chr3 (82-141)||(15823824-15823882)
chr3 (75-139)||(36871509-36871575)
chr3 (75-141)||(38890020-38890090)
chr3 (74-113)||(53973831-53973870)
chr3 (157-232)||(10612765-10612842)
chr3 (157-232)||(47878158-47878235)
chr3 (157-240)||(48390281-48390366)
chr3 (75-141)||(561982-562049)
chr3 (85-138)||(15771266-15771319)
chr3 (203-240)||(20031296-20031333)
chr3 (176-233)||(29913941-29913998)
chr3 (176-240)||(13893603-13893666)
chr3 (75-139)||(28761638-28761705)
chr3 (75-141)||(43421622-43421692)
[»] chr2 (32 HSPs)
chr2 (64-141)||(39287177-39287254)
chr2 (9-138)||(41304604-41304735)
chr2 (9-142)||(41303252-41303387)
chr2 (73-141)||(43139354-43139422)
chr2 (157-241)||(27517617-27517703)
chr2 (88-138)||(43483078-43483128)
chr2 (80-141)||(35028561-35028622)
chr2 (76-141)||(17897452-17897519)
chr2 (65-141)||(27248123-27248198)
chr2 (75-141)||(15539684-15539754)
chr2 (73-141)||(20146816-20146886)
chr2 (203-241)||(20049999-20050037)
chr2 (203-241)||(20054743-20054781)
chr2 (1-55)||(27583631-27583685)
chr2 (176-233)||(17943674-17943731)
chr2 (85-138)||(26345585-26345638)
chr2 (176-241)||(30479133-30479198)
chr2 (74-138)||(34575332-34575397)
chr2 (176-224)||(10942505-10942553)
chr2 (176-224)||(10948374-10948422)
chr2 (75-137)||(11578318-11578383)
chr2 (157-233)||(12781207-12781285)
chr2 (82-141)||(30261987-30262045)
chr2 (158-224)||(43482846-43482912)
chr2 (203-240)||(38191178-38191215)
chr2 (85-141)||(10942732-10942788)
chr2 (85-141)||(10948601-10948657)
chr2 (178-222)||(11578104-11578148)
chr2 (76-115)||(11739798-11739838)
chr2 (75-142)||(31732973-31733044)
chr2 (176-232)||(34575123-34575179)
chr2 (178-222)||(40699590-40699634)
[»] chr6 (29 HSPs)
chr6 (80-142)||(17904570-17904632)
chr6 (157-241)||(3577468-3577553)
chr6 (72-141)||(22858162-22858231)
chr6 (157-240)||(13467446-13467530)
chr6 (157-241)||(25941787-25941873)
chr6 (72-137)||(11138337-11138402)
chr6 (72-141)||(30445552-30445621)
chr6 (93-141)||(4595049-4595097)
chr6 (73-141)||(16455633-16455703)
chr6 (74-141)||(30443336-30443403)
chr6 (204-241)||(22351831-22351868)
chr6 (75-141)||(2629094-2629164)
chr6 (73-141)||(3028061-3028130)
chr6 (75-141)||(3632147-3632217)
chr6 (73-141)||(19696477-19696546)
chr6 (75-141)||(32447525-32447595)
chr6 (176-222)||(17012312-17012358)
chr6 (203-241)||(22342779-22342817)
chr6 (64-141)||(24542888-24542964)
chr6 (203-240)||(26643340-26643377)
chr6 (203-240)||(26749306-26749343)
chr6 (157-233)||(26887212-26887289)
chr6 (75-141)||(3390414-3390484)
chr6 (93-141)||(3630073-3630124)
chr6 (85-141)||(6843178-6843234)
chr6 (203-239)||(12166126-12166162)
chr6 (74-141)||(14507384-14507455)
chr6 (4-36)||(20526768-20526800)
chr6 (74-141)||(30034812-30034883)
[»] chr8 (19 HSPs)
chr8 (5-138)||(13986035-13986170)
chr8 (73-141)||(31573934-31574002)
chr8 (75-141)||(27911071-27911140)
chr8 (75-141)||(27957490-27957559)
chr8 (176-241)||(23179539-23179604)
chr8 (175-244)||(28228655-28228726)
chr8 (67-122)||(13985317-13985372)
chr8 (73-141)||(31035124-31035194)
chr8 (203-240)||(3276464-3276501)
chr8 (70-141)||(30423109-30423180)
chr8 (75-141)||(41384800-41384870)
chr8 (6-44)||(11701268-11701306)
chr8 (157-240)||(17799403-17799488)
chr8 (74-115)||(41382728-41382770)
chr8 (80-141)||(15944780-15944841)
chr8 (176-232)||(3005617-3005673)
chr8 (176-240)||(30423354-30423418)
chr8 (89-141)||(33839141-33839193)
chr8 (75-138)||(36865594-36865661)
[»] chr7 (25 HSPs)
chr7 (73-141)||(11081520-11081588)
chr7 (72-141)||(6048882-6048951)
chr7 (19-127)||(10691063-10691170)
chr7 (157-241)||(7464497-7464583)
chr7 (157-241)||(34546858-34546944)
chr7 (75-141)||(24258473-24258543)
chr7 (75-141)||(7188553-7188621)
chr7 (75-141)||(24817560-24817628)
chr7 (105-141)||(13290683-13290719)
chr7 (80-135)||(30246877-30246933)
chr7 (162-247)||(2990598-2990687)
chr7 (157-233)||(25351469-25351547)
chr7 (75-141)||(39146196-39146266)
chr7 (75-141)||(40946338-40946408)
chr7 (157-240)||(44010729-44010814)
chr7 (203-241)||(44512504-44512542)
chr7 (176-237)||(2075254-2075315)
chr7 (176-241)||(2121038-2121103)
chr7 (176-241)||(1606626-1606692)
chr7 (73-138)||(6348828-6348895)
chr7 (75-135)||(26210556-26210616)
chr7 (75-141)||(37412336-37412407)
chr7 (176-240)||(44016640-44016704)
chr7 (70-141)||(44016875-44016946)
chr7 (157-240)||(44143846-44143930)
[»] chr4 (35 HSPs)
chr4 (68-141)||(10112920-10112993)
chr4 (65-141)||(54906620-54906697)
chr4 (72-141)||(9022359-9022428)
chr4 (72-141)||(52043591-52043660)
chr4 (74-142)||(9863764-9863833)
chr4 (73-141)||(28453740-28453808)
chr4 (73-141)||(8756460-8756530)
chr4 (75-141)||(19322751-19322819)
chr4 (176-237)||(25613938-25613999)
chr4 (1-141)||(32274116-32274255)
chr4 (85-141)||(5516465-5516521)
chr4 (75-141)||(37313275-37313345)
chr4 (203-240)||(36771562-36771599)
chr4 (72-141)||(38208892-38208961)
chr4 (75-136)||(15032752-15032815)
chr4 (73-141)||(47151102-47151169)
chr4 (157-233)||(8529385-8529463)
chr4 (74-121)||(29609675-29609722)
chr4 (75-141)||(36378346-36378416)
chr4 (157-232)||(4884992-4885069)
chr4 (75-141)||(10114387-10114453)
chr4 (157-240)||(36769597-36769682)
chr4 (203-240)||(4570259-4570296)
chr4 (157-233)||(15317076-15317153)
chr4 (176-233)||(18587105-18587162)
chr4 (75-115)||(19095936-19095977)
chr4 (1-38)||(23001703-23001740)
chr4 (74-141)||(2485081-2485152)
chr4 (65-117)||(3760023-3760074)
chr4 (70-141)||(4558208-4558279)
chr4 (70-141)||(16638724-16638795)
chr4 (65-141)||(26557631-26557706)
chr4 (157-222)||(26557855-26557922)
chr4 (75-142)||(31849807-31849878)
chr4 (4-36)||(54928999-54929031)
[»] chr5 (26 HSPs)
chr5 (72-138)||(29748349-29748415)
chr5 (74-141)||(35430171-35430238)
chr5 (74-135)||(2144780-2144841)
chr5 (74-141)||(4754158-4754225)
chr5 (72-141)||(17413375-17413444)
chr5 (203-241)||(1240594-1240632)
chr5 (64-122)||(5777832-5777890)
chr5 (72-141)||(15224978-15225050)
chr5 (157-240)||(42238378-42238463)
chr5 (75-141)||(6661393-6661461)
chr5 (75-141)||(16092409-16092479)
chr5 (70-141)||(26406687-26406757)
chr5 (1-55)||(6661487-6661541)
chr5 (67-141)||(13295734-13295808)
chr5 (1-55)||(15143407-15143461)
chr5 (176-238)||(31782437-31782498)
chr5 (203-240)||(11962412-11962449)
chr5 (176-233)||(22672973-22673030)
chr5 (176-233)||(25445635-25445692)
chr5 (176-233)||(25452634-25452691)
chr5 (176-237)||(28786543-28786604)
chr5 (74-142)||(31472821-31472893)
chr5 (64-141)||(32520421-32520497)
chr5 (70-141)||(10627260-10627331)
chr5 (65-141)||(13294675-13294751)
chr5 (176-240)||(17841228-17841292)
[»] scaffold0008 (1 HSPs)
scaffold0008 (21-136)||(57657-57772)
[»] scaffold0224 (1 HSPs)
scaffold0224 (79-141)||(16029-16093)
[»] scaffold0133 (1 HSPs)
scaffold0133 (4-55)||(4746-4797)
[»] scaffold0209 (1 HSPs)
scaffold0209 (176-233)||(16972-17029)
[»] scaffold0045 (1 HSPs)
scaffold0045 (93-142)||(85258-85310)
[»] scaffold0468 (1 HSPs)
scaffold0468 (75-115)||(1870-1910)
[»] scaffold0031 (1 HSPs)
scaffold0031 (74-141)||(79193-79264)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 32260966 - 32261117
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcagacaaatatcgagagagtagaaaacaagggtttagaagccaacaaca 100  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  32260966 atccgtttcaaatttacgagttatatttctctataaatatagatcttgtgt-aca-aaatatcgagagagtagaaaacaagggtttagaagccaacaaca 32261063  T
Q  101 aaattagggtttgtagagttttctcttagcaacaaacactaattagggttggga 154  Q
    ||| || ||||||||||||||||||||  ||||||||||| | |||||||||||    
T  32261064 aaactaaggtttgtagagttttctcttgacaacaaacactgactagggttggga 32261117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 27916497 - 27916566
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  27916497 agaaaacaagggtttagaagccagcaagaaaactagggtttgtagagtttgctcttggcaacaaacacta 27916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 26332837 - 26332771
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||    
T  26332837 aaaacaagggtttagaagccaaca-caaaaatagggtttgtagagtttgctcttggcaacaaacacta 26332771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 14352902 - 14353026
Alignment:
Q  9 caaatttacaagttatatttctctataaatacagatcttgtgtcagacaaatatcgagagagtagaaaacaagggtttagaagccaacaacaaaattagg 108  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||   ||||||  | |||||      ||||| || ||||||||||||||||| ||||    
T  14352902 caaatttacgagttatatttctctataaatacagatcatgtatcatg-aaatatgtaaagagt------caaggatt-agaagccaacaacaaaactagg 14352993  T
Q  109 gtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||| |||||||||||||    
T  14352994 gtttgtagagatttctcttggcaacaaacacta 14353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 28279277 - 28279336
Alignment:
Q  82 ggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||||||    
T  28279277 ggtttagaagccaataacaaaattagggtttgtagagtttgctcttgacaacaaacacta 28279336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 31047799 - 31047726
Alignment:
Q  69 agtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacactaat 143  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||  |||||| |||| ||||||||||    
T  31047799 agtagaaaacaagagtttagaagccaacaacaaaacta-ggtttgtagagtactctcttggcaataaacactaat 31047726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 49959041 - 49959105
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    |||||||||||||||||||||||||||||| || |||||||||||  | ||||| ||||||||||    
T  49959041 aaaacaagggtttagaagccaacaacaaaactatggtttgtagagaatcctcttggcaacaaaca 49959105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 2393346 - 2393261
Alignment:
Q  157 tagtggaacggagagttgttctc-ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || |||| ||||||| ||| |||  ||| | ||||||| | |||||||||||||||||||||||||||||    
T  2393346 tagtggaacggagagctgctctctccccagactaggtcatcattagaccgaactggataaacaaattcttgtgttcttcttcttct 2393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 2401264 - 2401199
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  2401264 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 2401199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 8349329 - 8349261
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||| ||||||| ||||||  |||||||| ||||| |||||||||||||    
T  8349329 aaacaagggtttagaagtcaacaagaaaattaaggtttgtatagagtttgctcttggcaacaaacacta 8349261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 4144726 - 4144662
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| |||  ||| | ||||||| |||||||||||||||||||||| |||||||    
T  4144726 tctcccccagagtaggtcatcattagaccgaactgggtaaacaaattcttgtgttctccttcttc 4144662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 37990682 - 37990737
Alignment:
Q  86 tagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||| |||| ||||||||| |||||||  |||||||||||||    
T  37990682 tagaagccaacaacaaaactaggatttgtagagatttctctcggcaacaaacacta 37990737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 25134189 - 25134274
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| |||||||  ||||| | |||||||  ||| | ||||| | |||||||||||||||||||||| |||||||    
T  25134189 tagtggaacggagagctgttctctcccccatactagatcatcattagaccgaagtgggtaaacaaattcttgtgttctccttcttc 25134274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 32261358 - 32261442
Alignment:
Q  156 ttagtggaacggagagttgttctccccc--agagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttctctctcg 247  Q
    ||||||||||||||||||||||||||||  ||||||| ||         |||||||||||||| ||||| || |||||||||||||||||||||    
T  32261358 ttagtggaacggagagttgttctcccccccagagtaggtc---------ccgaactaggtaaataaatttttatgttcttcttcttctctctcg 32261442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 13127910 - 13127842
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtt--tgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||| |||| |||||||  | |||||||| || || |||||||||||||    
T  13127910 aaacaagggtttagaagccaacaagaaaagtagggtttatatagagtttccttttggcaacaaacacta 13127842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 42922238 - 42922302
Alignment:
Q  79 aagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||| |||| |||||||||  |||||||| ||| |||||||||||||||    
T  42922238 aagggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcctagcaacaaacacta 42922302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 13785548 - 13785492
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||| || ||||| || |||||||||||||| |||||||| |||||||||||||    
T  13785548 ttagaagtcagcaacataactagggtttgtagagatttctcttggcaacaaacacta 13785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 26520399 - 26520328
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgta--gagttttctcttagcaacaaacactaa 142  Q
    |||||||| |||||||||| |||||| |||| |||||||| ||  |||||| ||||| ||||||||||||||    
T  26520399 gaaaacaacggtttagaagtcaacaagaaaactagggtttctatagagtttgctcttggcaacaaacactaa 26520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 8347550 - 8347484
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacac 139  Q
    ||||||||||||||||| |||||| |||| |||||||||  ||||| || ||||| |||||||||||    
T  8347550 aaacaagggtttagaagtcaacaagaaaactagggtttgtatagagattgctcttggcaacaaacac 8347484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 17186405 - 17186339
Alignment:
Q  79 aagggtttagaa-gccaacaacaaaattagggtttgta--gagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||| | ||||||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  17186405 aagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttagcaacaaacacta 17186339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 17318893 - 17318963
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  17318893 aaacaagggtttagaaaggcaacaacaaaactagggtttgtttagagtttgtctcttggcaacaaacacta 17318963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16561388 - 16561426
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaata 39  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  16561388 atccgtttcaaatttatgagttatatttctctataaata 16561426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 26613283 - 26613237
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaatt 222  Q
    ||||||||||| ||| |||||||||| ||||||| ||||||||||||    
T  26613283 tctcccccagattaggtcagtatttgaccgaactgggtaaacaaatt 26613237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 46783264 - 46783353
Alignment:
Q  157 tagtggaacggagagttgtt--ctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttctctc 244  Q
    ||||||||| ||||| ||||  |||| ||||||||  ||| |||| |  |||||| | |||||||||| |||||||||||||||||||||    
T  46783264 tagtggaacagagagctgttatctcctccagagtaagtcaatattggatcgaactggataaacaaattattgtgttcttcttcttctctc 46783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 3091145 - 3091084
Alignment:
Q  179 cccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    |||||||||||| |||  ||| | ||||||| | |||||| |||||||||||||||||||||    
T  3091145 cccccagagtaggtcatcattagaccgaactggataaacagattcttgtgttcttcttcttc 3091084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 16226166 - 16226237
Alignment:
Q  74 aaaacaagggtttagaagc-caacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||||   ||||||||||| |||||||||  |||||||| |||||||| |||||||||||    
T  16226166 aaaacaagggtttagaaaagcaacaacaaaactagggtttgtatagagtttgtctcttaggaacaaacacta 16226237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 16428653 - 16428724
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacactaa 142  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| ||||||  |||||||||||||    
T  16428653 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttgacaacaaacactaa 16428724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 20291457 - 20291528
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacactaa 142  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | ||||||||||||    
T  20291457 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttcggaacaaacactaa 20291528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 31489915 - 31489983
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttgtagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| |  |||||||||| ||||||||||| ||||| |||||| | |||||||||||    
T  31489915 aaacaagggtttagaaaggtaacaacaaaactagggtttgtatagtttgtctctttggaacaaacacta 31489983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 31735803 - 31735732
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | |||||||||||    
T  31735803 aaaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttcggaacaaacacta 31735732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 46783039 - 46783111
Alignment:
Q  69 agtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||  |||||||||||||||||||  ||| || ||||| |||||  || |||| |||||||||||||    
T  46783039 agtagaaaaatagggtttagaagccaacaaacaaactatggtttatagagaattatctttgcaacaaacacta 46783111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 11072845 - 11072983
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcagac-aaatatcgagagagtagaaaa-caagggtttagaagccaacaa 98  Q
    ||||||| |||||||   ||||||||||||||||||||| ||||||||| |||||  |||||| |||||||||||||| |||||||||||||| ||||||    
T  11072845 atccgttccaaatttgtgagttatatttctctataaataaagatcttgtatcagaggaaatatggagagagtagaaaaacaagggtttagaagtcaacaa 11072944  T
Q  99 caaaattagggtttgtagagttttctcttagcaacaaac 137  Q
    ||||| ||| ||||| ||||||||||||| |||||||||    
T  11072945 caaaactagagtttggagagttttctcttggcaacaaac 11072983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 11066489 - 11066631
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcagac-aaatatcgagagagtagaaaa-caagggtttagaagccaacaa 98  Q
    ||||||| |||||||   |||| | |||||||||||||||| ||||||| |||||  |||||| |||||||||||||| |||||||||||||| ||||||    
T  11066489 atccgttccaaatttgtgagttctctttctctataaatacaaatcttgtatcagaagaaatatggagagagtagaaaaacaagggtttagaagtcaacaa 11066588  T
Q  99 caaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||| |   ||||||||||||||||||| |||| ||||||||    
T  11066589 caaaactgaagtttgtagagttttctcttggcaataaacacta 11066631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 13419865 - 13419931
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||| |||||| |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  13419865 aaacaaaggtttaaaagccaacaagaaaactagggtttgtagagtttgctcttggcaacaaacacta 13419931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 7768552 - 7768617
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||  ||||||| ||||||||||    
T  7768552 gaaaacaagggtttagaagccaacatcaaaactaaggtttgtagagaattctcttggcaacaaaca 7768617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 23941721 - 23941777
Alignment:
Q  65 agagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagtttt 122  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  23941721 agagagtagaaaa-acgggtttagaagccaacaacaaaactagggtttgtagagtttt 23941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 46966923 - 46966862
Alignment:
Q  80 agggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||    
T  46966923 agggtttagaagccaacaacaaaattaaggtttatagagattcctcttggcaacaaacacta 46966862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 27420633 - 27420701
Alignment:
Q  74 aaaacaagggttt-agaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||  || |||| |||||||||||||    
T  27420633 aaaacaagggttttagaagccagcaacaaaattagggtttgtagagaattttcttggcaacaaacacta 27420701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 23637006 - 23637075
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||||| |||| |||||||||  |||||| | ||||| |||||||||||||    
T  23637006 aaaacaagggtttagaagccaacaagaaaactagggtttgtatagagtctgctcttggcaacaaacacta 23637075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 10897144 - 10897209
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  10897144 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 10897209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 23633439 - 23633508
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||| ||||||||||||||| |||| |||||||||  ||| |||| ||||| |||||||||||||    
T  23633439 aaaacaaggatttagaagccaacaagaaaactagggtttgtatagtgtttgctcttggcaacaaacacta 23633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 27762002 - 27761965
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27762002 ccgaactgggtaaacaaattcttgtgttcttcttcttc 27761965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 31151327 - 31151395
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacac 139  Q
    ||||||||||||||||||  |||||| |||| |||||||||  |||||||| ||||| |||||||||||    
T  31151327 gaaaacaagggtttagaaatcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacac 31151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 53597220 - 53597288
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgta--gagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| ||| |||||| |||| ||||| |||||  |||||||||||| |||||||||||||    
T  53597220 aaacaagggtttataagtcaacaagaaaactaggggttgtatagagttttctcttggcaacaaacacta 53597288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 24177258 - 24177329
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacactaa 142  Q
    ||||||||| ||||||| | |||||| |||| |||||||||  |||||||| ||||| ||||||||||||||    
T  24177258 gaaaacaagagtttagatgtcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacactaa 24177329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 13893359 - 13893429
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||||| |||||  |||| |||||||| |||||  ||||||| |||||||||||||    
T  13893359 gtagaaaacaagg-tttagaagtcaacataaaaactagggtttatagagaattctcttggcaacaaacacta 13893429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 15823882 - 15823824
Alignment:
Q  82 ggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||| ||||||||||||||| | ||||||| |||||||||||||| | |||||||||||    
T  15823882 ggtttggaagccaacaacaaact-agggtttatagagttttctctttgaaacaaacacta 15823824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 36871575 - 36871509
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacac 139  Q
    ||||||||||||| |||||||||| |||| ||||| |||  |||||||| ||||| |||||||||||    
T  36871575 aaacaagggtttacaagccaacaagaaaactagggcttgtatagagtttgctcttggcaacaaacac 36871509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 38890020 - 38890090
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||||| |||||| | |||||||||||    
T  38890020 aaacaagggtttagaaaggcaacaacaaaattagggtttgtatagagtttgtctcttcggaacaaacacta 38890090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 53973870 - 53973831
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttg 113  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  53973870 aaaacaagggtttagaagccaacaacaaaactagagtttg 53973831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 10612842 - 10612765
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttct 232  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| ||||||||||||||||||||||    
T  10612842 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttct 10612765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 47878235 - 47878158
Alignment:
Q  157 tagtggaacggagagttgttctcccc--cagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttct 232  Q
    ||||||||||||||| || |||| ||  |||| ||| ||| |||| | ||||||| ||||||||||||||||||||||    
T  47878235 tagtggaacggagagctgctctctcctccagactaggtcattattagaccgaactgggtaaacaaattcttgtgttct 47878158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 48390366 - 48390281
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  |||   ||||||| |||||||||||||||||||||| |||||||    
T  48390366 tagtggaacggagagctgctctctcccccagactaggtcatcattaaaccgaactgggtaaacaaattcttgtgttctccttcttc 48390281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 562049 - 561982
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgta--gagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||  ||| | ||||||||||  |||||||||||| |||||||||||||    
T  562049 aaacaagggtttagaagtcaacatgaaact-agggtttgtatagagttttctcttggcaacaaacacta 561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 15771319 - 15771266
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    |||||||||||  |||||| || |  ||||||||||||||||||||||||||||    
T  15771319 ttagaagccaatgacaaaagtaagagttgtagagttttctcttagcaacaaaca 15771266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 20031333 - 20031296
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  20031333 ccgaactgggtaaacaaattcttgtgttctccttcttc 20031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 29913998 - 29913941
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  29913998 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 29913941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 13893603 - 13893666
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| ||| |||| | | ||||| |||||||| ||||||||||||| |||||||    
T  13893603 tctcccccagagtaggtcattattagac-gaactgggtaaacatattcttgtgttctccttcttc 13893666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 28761705 - 28761638
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacac 139  Q
    |||||||||||||||| | ||||||||||| |||||||||  || ||||| ||||| |||||||||||    
T  28761705 aaacaagggtttagaaagacaacaacaaaactagggtttgtatatagtttgctcttggcaacaaacac 28761638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 43421692 - 43421622
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttgtagag---ttttctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||   || |||||| |||||||||||||    
T  43421692 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagtgtttgtctcttggcaacaaacacta 43421622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 39287177 - 39287254
Alignment:
Q  64 gagagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||    
T  39287177 gagagagtagaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttagcaacaaacacta 39287254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 41304735 - 41304604
Alignment:
Q  9 caaatttacaagttatatttctctataaatacagatcttgtgtcagacaaatatcg-agagagtagaaaa-caagggtttagaagccaacaacaaaatta 106  Q
    ||||||||  ||||||||||||||||||||||||||||||  | |||  ||  | | ||||||||||||| |||||||||||||||||||||||||| ||    
T  41304735 caaatttatgagttatatttctctataaatacagatcttgcattagatgaaagttgtagagagtagaaaaacaagggtttagaagccaacaacaaaacta 41304636  T
Q  107 gggtttgtagagttttctcttagcaacaaaca 138  Q
    ||||||||| |||||||| || ||||||||||    
T  41304635 gggtttgtaaagttttctattggcaacaaaca 41304604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 41303387 - 41303252
Alignment:
Q  9 caaatttacaagttatatttctctataaatacagatcttgtgtcagacaaatatcgag-agagtagaaaa-caagggtttagaagccaacaacaaaatta 106  Q
    ||||||||| ||||||||||||||||||||| | ||||||| |||||  ||  | | | ||||||||||| |||||||||||||||||||||||||  ||    
T  41303387 caaatttacgagttatatttctctataaataaatatcttgtatcagatgaaagttgtggagagtagaaaaacaagggtttagaagccaacaacaaagata 41303288  T
Q  107 gggtttgtagagttttctcttagcaacaaacactaa 142  Q
    | ||||||||||||||  ||| ||||||||||||||    
T  41303287 gagtttgtagagtttttacttggcaacaaacactaa 41303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 43139354 - 43139422
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||  |||| | ||||||||||||||| ||||| |||||||||||||    
T  43139354 gaaaacaagggtttagaagccaacacaaaaacttgggtttgtagagtttgctcttggcaacaaacacta 43139422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 27517703 - 27517617
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  27517703 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaacttggtaaacaaattcttgtgttcttcttcttct 27517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 43483128 - 43483078
Alignment:
Q  88 gaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  43483128 gaagccaacaataaaattagggtttgtagagttttatcttatcaacaaaca 43483078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 35028561 - 35028622
Alignment:
Q  80 agggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| ||||| | |||||||||||    
T  35028561 agggtttagaatccaacaataaaatttgggtttgtagagtttgctcttggtaacaaacacta 35028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 17897519 - 17897452
Alignment:
Q  76 aacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||| |||||| |||| |||||||||  |||||||| ||||| |||||||||||||    
T  17897519 aacaagggtttagaagtcaacaataaaactagggtttgtatagagtttgctcttcgcaacaaacacta 17897452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 27248198 - 27248123
Alignment:
Q  65 agagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||| || ||||||||||||||||  || ||||||||||   ||||||| |||||||||||||    
T  27248198 agagagtagaaaacaaggatt-agaagccaacaacaaagctaaggtttgtagataattctcttggcaacaaacacta 27248123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 15539754 - 15539684
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  15539754 aaacaagggtttagaatgacaacaacaaaattagggtttgtatagagtttgtctcttggcaacaaacacta 15539684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 20146886 - 20146816
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||| |||||| |||| |||||||||  |||||||| | ||| |||||||||||||    
T  20146886 gaaaacaagggtttagaagtcaacaagaaaactagggtttgtatagagtttgcccttggcaacaaacacta 20146816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 20050037 - 20049999
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  20050037 ccgaactgggtaaacaaattcttgtgttcttcttcttct 20049999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 20054781 - 20054743
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  20054781 ccgaactgggtaaacaaattcttgtgttcttcttcttct 20054743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27583685 - 27583631
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcaga 55  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  27583685 atccgttccaaatttatgagttatatttctctataaatatagatcttgtatcaga 27583631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 17943674 - 17943731
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | |||||||||||||||||||||||||||||||    
T  17943674 tctcccccagactaggtcatcattagaccgaactaggtaaacaaattcttgtgttctt 17943731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 26345585 - 26345638
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    ||||||||||||||||||| |||| ||||||||| |||||||| | ||||||||    
T  26345585 ttagaagccaacaacaaaactaggatttgtagagatttctcttggtaacaaaca 26345638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 30479133 - 30479198
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||| ||| |||  ||| | ||||||| ||||||||||||||||| |||||||||||||    
T  30479133 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtattcttcttcttct 30479198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 34575397 - 34575332
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaaaca 138  Q
    ||||||||||||||||||||||||  |||| | ||| |||||||| ||||||||| ||||||||||    
T  34575397 aaaacaagggtttagaagccaacactaaaacttgggattgtagagtttttctcttggcaacaaaca 34575332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 10942553 - 10942505
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattct 224  Q
    ||||||| ||||||| |||||||| | ||||||||||||||||||||||    
T  10942553 tctcccctagagtaggtcagtattggaccgaactaggtaaacaaattct 10942505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 10948422 - 10948374
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattct 224  Q
    ||||||| ||||||| |||||||| | ||||||||||||||||||||||    
T  10948422 tctcccctagagtaggtcagtattggaccgaactaggtaaacaaattct 10948374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 11578383 - 11578318
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgtagag---ttttctcttagcaacaaac 137  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||   ||||||||| |||||||||    
T  11578383 aaacaagggtttagaagtcaacaaaaaaactagggtttgtatagaatttttctcttggcaacaaac 11578318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 12781285 - 12781207
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | |||||||||||||||||||| ||||||||||    
T  12781285 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactaggtaaacaaattattgtgttctt 12781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 30262045 - 30261987
Alignment:
Q  82 ggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||| |||| ||||||||    
T  30262045 ggtttagaagccaacaacaaact-acggtttatagagttttctcttggcaataaacacta 30261987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 43482912 - 43482846
Alignment:
Q  158 agtggaacggagagttgttctcccccagagtagatcagtatttggccgaactaggtaaacaaattct 224  Q
    |||||||| ||||||||||||||||||||| || | |||||| | | ||||| |||||| |||||||    
T  43482912 agtggaacagagagttgttctcccccagagcaggtaagtattggactgaactgggtaaataaattct 43482846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 38191178 - 38191215
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  38191178 ccgaactgggtaaacaaattcttgtgttctccttcttc 38191215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 10942788 - 10942732
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| || | ||||| ||||||||  ||||||| |||||||||||||    
T  10942788 ttagaagccaacaataatactagggattgtagagaattctcttggcaacaaacacta 10942732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 10948657 - 10948601
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| || | ||||| ||||||||  ||||||| |||||||||||||    
T  10948657 ttagaagccaacaataatactagggattgtagagaattctcttggcaacaaacacta 10948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 11578148 - 11578104
Alignment:
Q  178 tcccccagagtagatcagtatttggccgaactaggtaaacaaatt 222  Q
    ||||||||| ||||||||| || | ||||||||||||||||||||    
T  11578148 tcccccagactagatcagttttagaccgaactaggtaaacaaatt 11578104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 11739838 - 11739798
Alignment:
Q  76 aacaagggtttagaa-gccaacaacaaaattagggtttgta 115  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  11739838 aacaagggtttagaaagacaacaacaaaattagggtttgta 11739798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 31733044 - 31732973
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttgta--gagttt-tctcttagcaacaaacactaa 142  Q
    |||||||||||||||| | ||||||||||| ||| |||||||  |||||| |||||| ||||||||||||||    
T  31733044 aaacaagggtttagaaaggcaacaacaaaactagagtttgtatagagtttgtctcttggcaacaaacactaa 31732973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 34575179 - 34575123
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttct 232  Q
    ||||||||||| ||| |||| ||| |  ||||||||||||||||||| |||||||||    
T  34575179 tctcccccagactaggtcagcattggatcgaactaggtaaacaaatttttgtgttct 34575123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 40699590 - 40699634
Alignment:
Q  178 tcccccagagtagatcagtatttggccgaactaggtaaacaaatt 222  Q
    ||||||||| ||| |||||||| | ||||||||||||||||||||    
T  40699590 tcccccagactaggtcagtattagaccgaactaggtaaacaaatt 40699634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 17904632 - 17904570
Alignment:
Q  80 agggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacactaa 142  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17904632 agggtttagaagccaacaacaaaactagggtttgtagagttttctctttgcaacaaacactaa 17904570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 3577553 - 3577468
Alignment:
Q  157 tagtggaacggagagttgttctc-ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || |||| ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  3577553 tagtggaacggagagctgctctctccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 3577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 22858231 - 22858162
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||| ||||  |||| ||||||||||||| ||||||||| | |||||||||||    
T  22858231 agaaaacaagggtttagaagctaacacaaaaactagggtttgtagaattttctcttggtaacaaacacta 22858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 13467530 - 13467446
Alignment:
Q  157 tagtggaacggagagttgttctc-ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || |||| ||||||| ||| |||  ||| | |||||||||||||||||||||||||||||| |||||||    
T  13467530 tagtggaacggagagctgctctctccccagactaggtcatgattagaccgaactaggtaaacaaattcttgtgttctccttcttc 13467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 25941787 - 25941873
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  25941787 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 25941873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 11138337 - 11138402
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaac 137  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||||||| |||||  ||||||||    
T  11138337 agaaaacaagggtttagaagccaacactaaaactagggtttttagagtttactcttgacaacaaac 11138402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 30445552 - 30445621
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||| ||||||||||||||||  |||| |||||||||||||   ||||||| |||||||||||||    
T  30445552 agaaaacaatggtttagaagccaacattaaaactagggtttgtagataattctcttggcaacaaacacta 30445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 4595049 - 4595097
Alignment:
Q  93 caacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  4595049 caacaacaaaactagggtttgtagagttttcacttggcaacaaacacta 4595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 16455703 - 16455633
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgt--agagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||| |||||  |||| ||||||||||  ||||||||||||| ||||| |||||||    
T  16455703 gaaaacaagggtttagaagtcaacacaaaaactagggtttgtacagagttttctcttggcaacgaacacta 16455633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 30443336 - 30443403
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||| ||||| || | |||||||||  |||| || |||||||||||||    
T  30443336 aaaacaagggtttagaagccaacatcaaaactatgatttgtagagaattctgttggcaacaaacacta 30443403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 22351868 - 22351831
Alignment:
Q  204 cgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    |||||| |||||||||||||||||||||||||||||||    
T  22351868 cgaactgggtaaacaaattcttgtgttcttcttcttct 22351831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 2629164 - 2629094
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||||| |||||||||||    
T  2629164 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttaggaacaaacacta 2629094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 3028130 - 3028061
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgta--gagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| |||| ||||| ||||| |||||||||||  |||||| ||||| |||||||||||||    
T  3028130 gaaaacaagggtttggaaggcaaca-caaaactagggtttgtatagagtttgctcttggcaacaaacacta 3028061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 3632217 - 3632147
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  3632217 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 3632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 19696477 - 19696546
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||| | |||||| |||||||||||||  |||||||| ||||| ||||||| |||||    
T  19696477 gaaaacaagggtttagaaacaaacaac-aaattagggtttgtatagagtttgctcttggcaacaatcacta 19696546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 32447595 - 32447525
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  32447595 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 32447525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 17012312 - 17012358
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaatt 222  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||||    
T  17012312 tctcccccagactaggtcagtattggaccgaactaggtaaacaaatt 17012358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 22342817 - 22342779
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  22342817 ccgaactgggtaaacaaattcttgtgttcttcatcttct 22342779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 24542964 - 24542888
Alignment:
Q  64 gagagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||| ||||||  | |||||||||||||||| |||| | | ||||| ||||| |||||||| |||||||||||||    
T  24542964 gagagagcagaaaaataaggtttagaagccaacaccaaact-atggtttatagagatttctcttggcaacaaacacta 24542888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 26643340 - 26643377
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  26643340 ccgaactgggtaaacaaattcttgtgttctccttcttc 26643377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 26749306 - 26749343
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  26749306 ccgaactgggtaaacaaattcttgtgttctccttcttc 26749343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 26887289 - 26887212
Alignment:
Q  157 tagtggaacggagagttgttctcccccagagtagatcagtatttggccgaactaggtaaacaaat-tcttgtgttctt 233  Q
    ||||||| ||||||| || ||||||||||| ||| |||  ||| | ||||||| ||||||||||| ||||||||||||    
T  26887289 tagtggatcggagagctgctctcccccagactaggtcatcattagaccgaactgggtaaacaaatatcttgtgttctt 26887212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 3390414 - 3390484
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttgtagag---ttttctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||   ||||||||| | |||||||||||    
T  3390414 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttttctctttggaacaaacacta 3390484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 3630124 - 3630073
Alignment:
Q  93 caacaacaaaattagggtttgta--gagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  3630124 caacaacaaaactagggtttgtatagagtttgtctcttagcaacaaacacta 3630073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 6843178 - 6843234
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| |||| || |||||||||||  || |||| |||||||||||||    
T  6843178 ttagaagccaacaataaaactatggtttgtagagaattttcttggcaacaaacacta 6843234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 12166162 - 12166126
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttctt 239  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  12166162 ccgaactgggtaaacaaattcttgtgttctccttctt 12166126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 14507455 - 14507384
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | |||||||||||    
T  14507455 aaaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttcggaacaaacacta 14507384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 20526768 - 20526800
Alignment:
Q  4 cgtttcaaatttacaagttatatttctctataa 36  Q
    |||| ||||||||||||||||||||||||||||    
T  20526768 cgttccaaatttacaagttatatttctctataa 20526800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 30034883 - 30034812
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| | ||||||||||||||| |||||  |||||||| |||||| | |||||||||||    
T  30034883 aaaacaagggtttagaaaggcaacaacaaaattagagtttgtatagagtttgtctcttcggaacaaacacta 30034812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 13986170 - 13986035
Alignment:
Q  5 gtttcaaatttacaagttatatttctctataaatacagatcttgtgtcagac-aaatatc-gagagagtagaaaa-caagggtttagaagccaacaacaa 101  Q
    ||||||||||||| || ||||||||||| |||| ||||||||||| ||||   ||||||  |||||||||||||| |||||||||||||| |||||||||    
T  13986170 gtttcaaatttacgagctatatttctctgtaaa-acagatcttgtatcagttgaaatatgagagagagtagaaaaacaagggtttagaagtcaacaacaa 13986072  T
Q  102 aattagggtttgtagagttttctcttagcaacaaaca 138  Q
    || |||  |||||||||||||||||| | ||||||||    
T  13986071 aactagaatttgtagagttttctcttggaaacaaaca 13986035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 31574002 - 31573934
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||| ||||||||||||||||  |||| |||| |||||||||||||||||| |||||||||||||    
T  31574002 gaaaacaaaggtttagaagccaacacgaaaactaggatttgtagagttttctcttggcaacaaacacta 31573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 27911071 - 27911140
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  27911071 aaacaagggtttagaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 27911140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 27957490 - 27957559
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  27957490 aaacaagggtttagaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 27957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 23179604 - 23179539
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  23179604 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 23179539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 28228655 - 28228726
Alignment:
Q  175 ttctcccccagagtagatcagtatttggccgaactaggtaaacaaattc--ttgtgttcttcttcttctctc 244  Q
    |||||||||| ||||| ||| |||| | |||||||||||||||| ||||  |||||||||||||||||||||    
T  28228655 ttctcccccaaagtaggtcaatattggaccgaactaggtaaacacattcttttgtgttcttcttcttctctc 28228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 13985372 - 13985317
Alignment:
Q  67 agagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagtttt 122  Q
    |||||||||||  | |||||||||||||||||||||| ||| ||||||||||||||    
T  13985372 agagtagaaaaacaaggtttagaagccaacaacaaaactagagtttgtagagtttt 13985317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 31035124 - 31035194
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    |||||||| |||||||||| |||||| |||| |||||||||  |||||||| ||||| |||||||||||||    
T  31035124 gaaaacaatggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacacta 31035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 3276464 - 3276501
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3276464 ccgaactgggtaaacaaattcttgtgttcttcttcttc 3276501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 30423109 - 30423180
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaaacacta 141  Q
    |||||||||| ||||||||||||||||||  ||| |||||||| |||||  |||||||| |||||||||||||    
T  30423109 gtagaaaaca-gggtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacacta 30423180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 41384800 - 41384870
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||||| |||||| | |||||||||||    
T  41384800 aaacaagggtttagaatgacaacaacaaaattagggtttgtatagagtttgtctcttgggaacaaacacta 41384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 11701306 - 11701268
Alignment:
Q  6 tttcaaatttacaagttatatttctctataaatacagat 44  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  11701306 tttcaaatttacgagttatatttctctataaattcagat 11701268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 17799488 - 17799403
Alignment:
Q  157 tagtggaacggagagttgttctccc--ccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || |||| |  ||||| ||| |||  ||| | ||||||| |||||||||||||||||||||| |||||||    
T  17799488 tagtggaacggagagctgctctctctcccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctccttcttc 17799403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 41382728 - 41382770
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttgta 115  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  41382728 aaaacaagggtttagaatgacaacaacaaaattagggtttgta 41382770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 15944780 - 15944841
Alignment:
Q  80 agggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||  |||||||||||| |||||   |||||| |||||||||||||    
T  15944780 agggtttagaagctaacaaacaaattagggtttatagagaaatctcttggcaacaaacacta 15944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 3005673 - 3005617
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttct 232  Q
    |||||||||||  || ||||| || | ||||||| ||||||||||||||||||||||    
T  3005673 tctcccccagaccaggtcagttttggaccgaactgggtaaacaaattcttgtgttct 3005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 30423354 - 30423418
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||| ||||||||| |||  ||| | ||||||  |||||||||||||||||||||| |||||||    
T  30423354 tctcctccagagtaggtcatcattagaccgaacagggtaaacaaattcttgtgttctccttcttc 30423418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 33839193 - 33839141
Alignment:
Q  89 aagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||| || |||| |||| |||||| ||||||||||| |||||||||||||    
T  33839193 aagccaagaataaaactaggatttgtaaagttttctcttggcaacaaacacta 33839141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 36865594 - 36865661
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaaca 138  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| ||||||||||    
T  36865594 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaaca 36865661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 11081520 - 11081588
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||    
T  11081520 gaaaacaagggtttagaagccaacaacaaaactagggtttgtagagaattctcttggcaacaaacacta 11081588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 6048882 - 6048951
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||  ||||||| |||||||||||||    
T  6048882 agaaaacaagggtttagaagccaacatcaaaactagggtttgtaaagaattctcttggcaacaaacacta 6048951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 10691063 - 10691170
Alignment:
Q  19 agttatatttctctataaatacagatcttgtgtcaga-caaatatcgagagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtaga 117  Q
    ||||||||||||||||||||||| ||| |||||||||  ||| || ||||||| | ||||  |||||||||||||||||||| ||| ||||||||||| |    
T  10691063 agttatatttctctataaatacacatcgtgtgtcagatgaaagat-gagagagcacaaaaacagggtttagaagccaacaac-aaactagggtttgtaaa 10691160  T
Q  118 gttttctctt 127  Q
    ||||| ||||    
T  10691161 gttttatctt 10691170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 7464583 - 7464497
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  7464583 tagtggaacggagagctgctctcttccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 7464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 34546944 - 34546858
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||||||||||    
T  34546944 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttcttcttcttct 34546858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 24258473 - 24258543
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  24258473 aaacaagggtttagaaaggcaacaacaaaattagggtttgtatagagtttgtctcttggcaacaaacacta 24258543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 7188553 - 7188621
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||| |||| |||||||||  ||| |||| ||||| |||||||||||||    
T  7188553 aaacaagggtttagaagtcaacaataaaaatagggtttgtatagggtttgctcttggcaacaaacacta 7188621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 24817628 - 24817560
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||| | || |||||||||  |||||||| ||||| |||||||||||||    
T  24817628 aaacaagggtttagaagtcaacaagagaactagggtttgtatagagtttgctctttgcaacaaacacta 24817560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 13290719 - 13290683
Alignment:
Q  105 tagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||||||| |||||||||||||    
T  13290719 tagggtttgtagagttttctcttggcaacaaacacta 13290683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 30246877 - 30246933
Alignment:
Q  80 agggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaa 135  Q
    |||||||||||||||||||||||| |||||||| |||||  |||||||| |||||||    
T  30246877 agggtttagaagccaacaacaaaactagggtttatagagaatttctcttggcaacaa 30246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 2990687 - 2990598
Alignment:
Q  162 gaacggagagttgttc--tcccccagagtagatcagtatttggccgaactaggtaaacaaa--ttcttgtgttcttcttcttctctctcg 247  Q
    ||||||||||||| ||  ||||||||||||| || ||||| | ||||||| ||||||||||  | |||||||||||  ||||||||||||    
T  2990687 gaacggagagttgctccctcccccagagtaggtcggtattggaccgaactgggtaaacaaacttgcttgtgttctttctcttctctctcg 2990598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 25351469 - 25351547
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||| ||||||| |||||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  25351469 tagtggatcggagagctgttctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 25351547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 39146266 - 39146196
Alignment:
Q  75 aaacaagggtttaga-agccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||| || ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  39146266 aaacaagggtttagatagacaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 39146196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 40946338 - 40946408
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||||| |||||||||||    
T  40946338 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttagaaacaaacacta 40946408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 44010814 - 44010729
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||| ||||||||| |||||||    
T  44010814 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaacttggtaaacaaattattgtgttctccttcttc 44010729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 44512542 - 44512504
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  44512542 ccgaactgggtaaacaaattcttgtgttattcttcttct 44512504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 2075254 - 2075315
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttc 237  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||| ||||    
T  2075254 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctccttc 2075315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 2121038 - 2121103
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    ||||||||||| ||| |||  ||| | ||||| | ||||||||||||||||||||| |||||||||    
T  2121038 tctcccccagactaggtcatcattagaccgaattgggtaaacaaattcttgtgttcatcttcttct 2121103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 1606626 - 1606692
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaatt--cttgtgttcttcttcttct 241  Q
    ||||||||||| |||||||| ||| | ||||||| ||| ||||||||  |||||||||||||||||||    
T  1606626 tctcccccagactagatcag-attggaccgaactgggtcaacaaatttccttgtgttcttcttcttct 1606692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 6348828 - 6348895
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgta--gagttttctcttagcaacaaaca 138  Q
    |||||||||||||||||||  || || |||| |||||||||||  |||||| ||||| ||||||||||    
T  6348828 gaaaacaagggtttagaagtaaaaaagaaaactagggtttgtatcgagtttgctcttggcaacaaaca 6348895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 26210556 - 26210616
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaa 135  Q
    |||||||| ||||||| |||||  ||||| ||||||||||||||  ||||||| |||||||    
T  26210556 aaacaaggttttagaatccaacctcaaaactagggtttgtagagaattctcttggcaacaa 26210616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 37412407 - 37412336
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctc-ttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||| ||||||||||||||||    
T  37412407 aaacaagggtttagaatggcaacaacaaaactagggtttgtatagagtttgtctctttagcaacaaacacta 37412336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 44016704 - 44016640
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||| ||| |||  ||| | ||||| | |||||||||||||||||||||| |||||||    
T  44016704 tctcccccagactaggtcatcattagaccgaattgggtaaacaaattcttgtgttctccttcttc 44016640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 44016946 - 44016875
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||||||||||||   ||| |||||||| |||||  |||||||| |||||||||||||    
T  44016946 gtagaaaaca-gggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacacta 44016875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 44143930 - 44143846
Alignment:
Q  157 tagtggaacggagagttgttctc-ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    |||||||||||||||||| |||| ||||||| ||| |||  ||| | ||||| | | |||||||||||||| ||||| |||||||    
T  44143930 tagtggaacggagagttgctctctccccagactaggtcatcattagaccgaattggataaacaaattcttgcgttctccttcttc 44143846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 10112920 - 10112993
Alignment:
Q  68 gagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||| |||||||||||||||||||||||||  |||| ||||||||||||||||| ||||| |||||||||||||    
T  10112920 gagttgaaaacaagggtttagaagccaacacaaaaactagggtttgtagagtttgctcttggcaacaaacacta 10112993  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 54906620 - 54906697
Alignment:
Q  65 agagagtagaaaa-caagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||| |||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||    
T  54906620 agagagtagaaaaacaagggcttagaagccaacaataaaactagggtttgtaaagttttctctttgcaacaaacacta 54906697  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 9022359 - 9022428
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||  ||||||| |||||||||||||    
T  9022359 agaaaacaagggtttagaagtcaacatcaaaactagggtttgtagagaattctcttggcaacaaacacta 9022428  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 52043660 - 52043591
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||  || |||||||||    
T  52043660 agaaaacaagggtttagaagccaacatcaaaactaaggtttgtagagttttctcttgtcagcaaacacta 52043591  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 9863764 - 9863833
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaat-tagggtttgtagagttttctcttagcaacaaacactaa 142  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||  |||| ||||||||||||||    
T  9863764 aaaacaagggtttagaagccaaaaacaaaaactagggtttgtagagtttgttcttggcaacaaacactaa 9863833  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 28453740 - 28453808
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||  |||| ||||||||| ||||||| ||||| |||| ||||||||    
T  28453740 gaaaacaagggtttagaagccaacactaaaactagggtttgcagagtttgctcttggcaagaaacacta 28453808  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 8756530 - 8756460
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||||| |||||| ||||||||| ||||  |||||||| ||||| |||||||||||||    
T  8756530 gaaaacaagggtttagaagtcaacaagaaaattaggatttgtatagagtttgctcttggcaacaaacacta 8756460  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 19322751 - 19322819
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||| |||| |||||||||  |||||||| ||||| |||||||||||||    
T  19322751 aaacaagggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcttggcaacaaacacta 19322819  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 25613999 - 25613938
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttc 237  Q
    ||||||||||||||| |||  ||| | |||||||||||||||||||||||||||||| ||||    
T  25613999 tctcccccagagtaggtcatcattagaccgaactaggtaaacaaattcttgtgttctccttc 25613938  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32274255 - 32274116
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcaga-caaatatcgagagagtagaaaacaagggtttagaagccaacaac 99  Q
    ||||||| ||| ||||| |||||||||| | |||||||||||||||||| ||  |  ||||| |||||| | ||||||  | ||||||||||||||||||    
T  32274255 atccgttccaagtttacgagttatatttttatataaatacagatcttgtatctcattaaata-cgagagtggagaaaaacaaggtttagaagccaacaac 32274157  T
Q  100 aaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
     ||| ||| |||| ||||| ||||| || |||||||||||||    
T  32274156 -aaactagagtttatagagatttctattggcaacaaacacta 32274116  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 5516521 - 5516465
Alignment:
Q  85 ttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||| |||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  5516521 ttagaatccaacaacaaaaatagggtttgtagagatttcttttggcaacaaacacta 5516465  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 37313345 - 37313275
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  37313345 aaacaagggtttagaaaggcaacaacaaaattagggtttgcatagagtttgtctcttggcaacaaacacta 37313275  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 36771562 - 36771599
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36771562 ccgaactaggtaaacaaattcttgtgttctccttcttc 36771599  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 38208961 - 38208892
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||| || |  ||| |||||||||   ||||||| |||||||||||||    
T  38208961 agaaaacaagggtttagaagccaacatcatatctagcgtttgtagaaaattctcttggcaacaaacacta 38208892  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 15032815 - 15032752
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaa 136  Q
    ||||||||||||||||| |||||| |||| |||||||||  |||||||| ||||| ||||||||    
T  15032815 aaacaagggtttagaagtcaacaagaaaactagggtttgtatagagtttgctctttgcaacaaa 15032752  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 47151169 - 47151102
Alignment:
Q  73 gaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||| |||||| || ||||| |||||||| ||||| | ||| |||||||    
T  47151169 gaaaacaagggtttagaagccaac-acaaaactaaggtttatagagtttgctcttggtaaccaacacta 47151102  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 8529385 - 8529463
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  8529385 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 8529463  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 29609722 - 29609675
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttt 121  Q
    |||||||||||||| |||||||||  |||| |||||||||||||||||    
T  29609722 aaaacaagggtttataagccaacactaaaactagggtttgtagagttt 29609675  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 36378346 - 36378416
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| |||||||||||||    
T  36378346 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttggcaacaaacacta 36378416  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 4884992 - 4885069
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttct 232  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| ||||||||||||||||||||||    
T  4884992 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttct 4885069  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 10114387 - 10114453
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||| |||||||||||  |  |||| ||||||||||||||| | ||||| |||||||||||||    
T  10114387 aaacaaggttttagaagccataacaaaaactagggtttgtagagtctgctcttggcaacaaacacta 10114453  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 36769597 - 36769682
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| | |||||||||||||||||||| |||||||    
T  36769597 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactggataaacaaattcttgtgttctccttcttc 36769682  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 4570259 - 4570296
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    |||||||  |||||||||||||||||||||||||||||    
T  4570259 ccgaactgtgtaaacaaattcttgtgttcttcttcttc 4570296  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 15317076 - 15317153
Alignment:
Q  157 tagtggaacggagagttgttctc-ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||| ||||| || |||| ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  15317076 tagtggaacagagagctgctctctccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 15317153  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 18587105 - 18587162
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  18587105 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 18587162  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 19095936 - 19095977
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttgta 115  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  19095936 aaacaagggtttagaatgacaacaacaaaattagggtttgta 19095977  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23001740 - 23001703
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaat 38  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  23001740 atccgttccaaatttacgagttatatttctctataaat 23001703  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 2485152 - 2485081
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | |||||||||||    
T  2485152 aaaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttcggaacaaacacta 2485081  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 3760023 - 3760074
Alignment:
Q  65 agagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtaga 117  Q
    |||||||||||||||| | || | ||||||||||||||| |||||||||||||    
T  3760023 agagagtagaaaacaacgattaa-aagccaacaacaaaaatagggtttgtaga 3760074  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 4558208 - 4558279
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||||||||||||   ||| |||||||| |||||  |||||||| |||||||||||||    
T  4558208 gtagaaaaca-gggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacacta 4558279  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 16638724 - 16638795
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagag-ttttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||||||||||||   ||| |||||||| |||||  |||||||| |||||||||||||    
T  16638724 gtagaaaaca-gggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaaacacta 16638795  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 26557631 - 26557706
Alignment:
Q  65 agagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||  |||| |||||| | || |||||| | ||||||| ||||| |||||||| |||||||||||||    
T  26557631 agagagtagaaaaacagggattagaaacaaaaaacaaact-agggtttatagagatttctcttggcaacaaacacta 26557706  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 26557855 - 26557922
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaatt 222  Q
    ||||||||||||||| || ||||  ||||||| ||  |||||||| | ||||||||||||||||||||    
T  26557855 tagtggaacggagagctgctctctcccccagactaagtcagtattggaccgaactaggtaaacaaatt 26557922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 31849878 - 31849807
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacactaa 142  Q
    |||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | ||||||||||||    
T  31849878 aaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttcggaacaaacactaa 31849807  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 54929031 - 54928999
Alignment:
Q  4 cgtttcaaatttacaagttatatttctctataa 36  Q
    |||||||||||||| ||||||||||||||||||    
T  54929031 cgtttcaaatttacgagttatatttctctataa 54928999  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 29748349 - 29748415
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaaca 138  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||| ||||||||||    
T  29748349 agaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttggcaacaaaca 29748415  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 35430171 - 35430238
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| ||||||||    
T  35430171 aaaacaagggtttagaagtcaacatcaaaactagggtttgtacagttttctcttggcaataaacacta 35430238  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 2144841 - 2144780
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaa 135  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||| ||||| |||||||    
T  2144841 aaaacaagggtttagaagccaacactaaaactagggtttgtagagtttgctcttggcaacaa 2144780  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 4754158 - 4754225
Alignment:
Q  74 aaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||| |||||||||  || | ||||||||||||||||| ||||| |||||||||||||    
T  4754158 aaaacaagggtttaaaagccaacacaaacactagggtttgtagagtttgctcttggcaacaaacacta 4754225  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 17413444 - 17413375
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||| || ||  |||| || |||||||||||||| ||||| |||||||||||||    
T  17413444 agaaaacaagggtttagaaggcagcactaaaactatggtttgtagagtttgctcttggcaacaaacacta 17413375  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 1240594 - 1240632
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttct 241  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1240594 ccgaactaggtaaataaattcttgtgttcttcttcttct 1240632  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 5777890 - 5777832
Alignment:
Q  64 gagagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagtttt 122  Q
    ||||||||||||||  | || ||||||||||||||||||| ||| ||||||||||||||    
T  5777890 gagagagtagaaaaacaaggattagaagccaacaacaaaactagagtttgtagagtttt 5777832  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 15225050 - 15224978
Alignment:
Q  72 agaaaacaagggtttagaagccaacaacaaaattagggt---ttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||||||||||||||| ||||| ||||||   ||||||||   |||||| |||||||||||||    
T  15225050 agaaaacaagggtttagaagccaacatcaaaactagggtggcttgtagagaactctcttggcaacaaacacta 15224978  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 42238378 - 42238463
Alignment:
Q  157 tagtggaacggagagttgttctc--ccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||||||| || ||||  ||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||| |||||||    
T  42238378 tagtggaacggagagctgctctctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctccttcttc 42238463  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 6661461 - 6661393
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||||| |||||| ||||||||||| ||  ||||||||  |||| |||||||||||||    
T  6661461 aaacaagggtttagaagtcaacaagaaaattagggtatgtatagagtttgttcttggcaacaaacacta 6661393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 16092479 - 16092409
Alignment:
Q  75 aaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagt-tttctcttagcaacaaacacta 141  Q
    |||||||||||||||| | |||||||||||||||||||||  |||||| | |||||| |||||||||||||    
T  16092479 aaacaagggtttagaaaggcaacaacaaaattagggtttgtatagagtctgtctctttgcaacaaacacta 16092409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 26406757 - 26406687
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||||| |||||||  ||| |||||||| |||||  ||||||| |||||||||||||    
T  26406757 gtagaaaaca-gggtttagaaaccaacaaacaaactagggtttatagagaattctcttggcaacaaacacta 26406687  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6661541 - 6661487
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcaga 55  Q
    ||||||||||||||||  ||||||||||| ||||||||| ||| ||||| |||||    
T  6661541 atccgtttcaaatttatgagttatatttcactataaatatagaccttgtatcaga 6661487  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 13295734 - 13295808
Alignment:
Q  67 agagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||  | || ||| ||||||||||||||| ||||||||||| ||  |||| || |||||||||||||    
T  13295734 agagtagaaaaacatggattaaaagccaacaacaaaactagggtttgtatagaattcttttggcaacaaacacta 13295808  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15143407 - 15143461
Alignment:
Q  1 atccgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcaga 55  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||| ||||| |||||    
T  15143407 atccgttacaaatttatgagttatatttctctataaatatagaccttgtatcaga 15143461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 31782498 - 31782437
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttct 238  Q
    |||||||||||||||||||  ||| | ||||||| |||||||| ||||||||||||| |||||    
T  31782498 tctcccccagagtagatcatcattagaccgaact-ggtaaacagattcttgtgttctccttct 31782437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 11962449 - 11962412
Alignment:
Q  203 ccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  11962449 ccgaactgggtaaacaaattcttgtgttctccttcttc 11962412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 22672973 - 22673030
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  22672973 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 22673030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 25445635 - 25445692
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  25445635 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 25445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 25452634 - 25452691
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  25452634 tctcccccagaataggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 25452691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 28786543 - 28786604
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttc 237  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||| ||||    
T  28786543 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctccttc 28786604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 31472893 - 31472821
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacactaa 142  Q
    ||||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | ||||||||||||    
T  31472893 aaaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctcttgggaacaaacactaa 31472821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 32520421 - 32520497
Alignment:
Q  64 gagagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||||  | || ||||||||||||||||||| || ||||||||||| | |||  | |||||||||||||    
T  32520421 gagagagtagaaaaataaggattagaagccaacaacaaaacta-ggtttgtagagatctctggtggcaacaaacacta 32520497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 10627260 - 10627331
Alignment:
Q  70 gtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagt-tttctcttagcaacaaacacta 141  Q
    |||||||||| |||||||||||||||||   ||| ||| |||| |||||  ||||||||||||||||||||||    
T  10627260 gtagaaaaca-gggtttagaagccaacatacaaactagtgtttatagagaatttctcttagcaacaaacacta 10627331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 13294675 - 13294751
Alignment:
Q  65 agagagtagaaaacaagggtttagaagccaacaacaaaattagggtttgtagagttttctcttagcaacaaacacta 141  Q
    |||||||||||||  | || ||| ||| ||||||||||| ||| ||||||||||  ||||||| ||||||| |||||    
T  13294675 agagagtagaaaaacaaggattaaaagtcaacaacaaaactagagtttgtagagaattctcttggcaacaagcacta 13294751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 17841292 - 17841228
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttcttcttcttc 240  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||| ||||||||| |||||||    
T  17841292 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattattgtgttctccttcttc 17841228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 57772 - 57657
Alignment:
Q  21 ttatatttctctataaatacagatcttgtgtcagac-aaatatcgagagagtagaa-aacaagggtttagaagccaacaacaaaattagggtttgtagag 118  Q
    ||||||||||||| ||||||| ||||||| ||| |  |||||| | |||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||    
T  57772 ttatatttctctagaaatacatatcttgtatcaaatgaaatat-gcgagagtagaagaacaagg-tttagaagccaacaacaaaactagagtttgtagag 57675  T
Q  119 ttttctcttagcaacaaa 136  Q
    ||| ||||| ||||||||    
T  57674 tttactcttggcaacaaa 57657  T

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Target: scaffold0224 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 16093 - 16029
Alignment:
Q  79 aagggtttagaagccaacaacaaaattagggtttg--tagagttttctcttagcaacaaacacta 141  Q
    ||||||||||||| |||||| |||| |||||||||  |||||||| ||| |||||||||||||||    
T  16093 aagggtttagaagtcaacaagaaaactagggtttgtatagagtttgctcctagcaacaaacacta 16029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 4746 - 4797
Alignment:
Q  4 cgtttcaaatttacaagttatatttctctataaatacagatcttgtgtcaga 55  Q
    |||||||||||||  ||||||||||||||||||||| ||| ||||| |||||    
T  4746 cgtttcaaatttatgagttatatttctctataaatatagaccttgtatcaga 4797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 17029 - 16972
Alignment:
Q  176 tctcccccagagtagatcagtatttggccgaactaggtaaacaaattcttgtgttctt 233  Q
    ||||||||||| ||| |||  ||| | ||||||| |||||||||||||||||||||||    
T  17029 tctcccccagactaggtcatcattagaccgaactgggtaaacaaattcttgtgttctt 16972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 85258 - 85310
Alignment:
Q  93 caacaacaaaattagggtttgta--gagttt-tctcttagcaacaaacactaa 142  Q
    ||||||||||| |||||||||||  |||||| |||||||||||||||||||||    
T  85258 caacaacaaaactagggtttgtatagagtttgtctcttagcaacaaacactaa 85310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 1910 - 1870
Alignment:
Q  75 aaacaagggtttagaagccaacaacaaaattagggtttgta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  1910 aaacaagggtttagaagtcaacaagaaaactagggtttgta 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 79193 - 79264
Alignment:
Q  74 aaaacaagggtttagaa-gccaacaacaaaattagggtttg--tagagttt-tctcttagcaacaaacacta 141  Q
    ||||||||||||||||| | ||||||||||| |||||||||  |||||||| |||||| | |||||||||||    
T  79193 aaaacaagggtttagaaaggcaacaacaaaactagggtttgtatagagtttgtctctttggaacaaacacta 79264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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