View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_14 (Length: 246)
Name: NF10447_high_14
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3810240 - 3810451
Alignment:
| Q |
1 |
attgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagc |
100 |
Q |
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| T |
3810240 |
attgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagc |
3810339 |
T |
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| Q |
101 |
aagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtcttta |
200 |
Q |
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| T |
3810340 |
aagtgaagatgggtttg-------------------acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtattta |
3810420 |
T |
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| Q |
201 |
cagcagaaagaatcaatgaagtcaattgatg |
231 |
Q |
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| T |
3810421 |
cagcagaaagaatcaatgaagtcaattgatg |
3810451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
106 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
193 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
87 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
175 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
106 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
193 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
87 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
163 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
117 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
181 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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