View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_17 (Length: 241)
Name: NF10447_high_17
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 3810243 - 3810017
Alignment:
| Q |
15 |
caattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggtttcctttctatagtccctgcagctc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810243 |
caattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggtttcctttctatagtccctgcagctc |
3810144 |
T |
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| Q |
115 |
tgttgacactgcttcttctagctggctgttcatacacaaatggaaatataccaatcttccctgagaatgtctcctttccttcgttgtcaaacctgggtct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810143 |
tgttgacactgcttcttctagctggctgttcatacacaaatggaaatataccaatcttccctgagaatgtctcctttccttcgttgtcaaacctgggtct |
3810044 |
T |
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| Q |
215 |
ggccactgcagctacaaacataagctt |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3810043 |
ggccactgcagctacaaacataagctt |
3810017 |
T |
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