View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_19 (Length: 229)
Name: NF10447_high_19
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_19 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 4182401 - 4182462
Alignment:
| Q |
23 |
aatgagacaactggtaaaactgcaaggtacaaaccattaccaagcaactaccagaaagggat |
84 |
Q |
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| T |
4182401 |
aatgagacaactgttaaaactgcaagatacaaaccattaccaagcaactaccagaaagggat |
4182462 |
T |
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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 4743245 - 4743306
Alignment:
| Q |
23 |
aatgagacaactggtaaaactgcaaggtacaaaccattaccaagcaactaccagaaagggat |
84 |
Q |
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| T |
4743245 |
aatgagacaactgttaaaactgcaagatacaaaccattaccaagcaactaccagaaagggat |
4743306 |
T |
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Target: scaffold0710 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 3061 - 2972
Alignment:
| Q |
90 |
ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat |
176 |
Q |
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| T |
3061 |
ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat |
2972 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 51855666 - 51855577
Alignment:
| Q |
90 |
ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat |
176 |
Q |
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| T |
51855666 |
ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat |
51855577 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 13951694 - 13951770
Alignment:
| Q |
92 |
aactgcaaggacttaatttttctcacgtcaacctttaaatattctatctctatatgatattaaattaagcttgtttga |
169 |
Q |
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||||||||||||| || ||| |||| || |||||||||||||| |||||||| ||||||| |||| ||||||||||| |
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| T |
13951694 |
aactgcaaggactaaactttg-tcacatctacctttaaatattccatctctatttgatattgaatttagcttgtttga |
13951770 |
T |
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