View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10447_high_4 (Length: 427)

Name: NF10447_high_4
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10447_high_4
NF10447_high_4
[»] chr8 (6 HSPs)
chr8 (1-412)||(7035381-7035792)
chr8 (13-330)||(7028691-7029008)
chr8 (13-316)||(7078234-7078537)
chr8 (13-316)||(7021088-7021391)
chr8 (32-113)||(7086979-7087060)
chr8 (13-90)||(7069936-7070013)
[»] chr4 (8 HSPs)
chr4 (31-110)||(3821534-3821613)
chr4 (13-110)||(4003270-4003367)
chr4 (31-110)||(3811961-3812040)
chr4 (13-113)||(3953038-3953138)
chr4 (13-113)||(4220769-4220869)
chr4 (32-110)||(3988159-3988237)
chr4 (25-108)||(3916008-3916091)
chr4 (31-110)||(4011749-4011828)
[»] chr5 (1 HSPs)
chr5 (25-110)||(13399111-13399196)
[»] scaffold0070 (1 HSPs)
scaffold0070 (55-108)||(19738-19791)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 7035381 - 7035792
Alignment:
Q  1 agaacttcatacagcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaata 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035381 agaacttcatacagcaattgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaata 7035480  T
Q  101 gtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgctt 200  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035481 gtcgagtgcagagcaaattatggcaggattctattgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgctt 7035580  T
Q  201 ttgctcaacatgnnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattt 300  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035581 ttgctcaacatgaacaaaagtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattt 7035680  T
Q  301 tccgtaagtgttctttcacaaataaattttgataggtaactagtctaaagaaaattcaagagaggtagaagtactacagatgtaaattactacatgcaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7035681 tccgtaagtgttctttcacaaataaattttgataggtaactagtctaaagaaaattcaagagaggtagaagtactacagatgtaaattattacatgcaaa 7035780  T
Q  401 tagttgagaagt 412  Q
    ||||||||||||    
T  7035781 tagttgagaagt 7035792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 7028691 - 7029008
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 112  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7028691 agcaattgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcaga 7028790  T
Q  113 gcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaacatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7028791 gcaaattatggtagggttctaatgccagttttctaccaagtatatccctcagatgtacggcatcaaaatgggacttatagagatgcttttgctcaacatg 7028890  T
Q  213 nnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattttccgtaagtgtt 312  Q
           ||||| ||   | ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||     
T  7028891 aacaaaagtatagttcctacaaggtgctaagctggagatctgctttgaagcaatctgctaatatgtctggatttgattcatcacttttttcgtaagtgtc 7028990  T
Q  313 ctttcacaaataaatttt 330  Q
    ||||||||||||||||||    
T  7028991 ctttcacaaataaatttt 7029008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 7078537 - 7078234
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 112  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||| |||    
T  7078537 agcaattgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaga 7078438  T
Q  113 gcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaacatg 212  Q
    | ||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| || | |||||||||| ||||||||||||||||||||||||||    
T  7078437 gaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatg 7078338  T
Q  213 nnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattttccgtaagtgtt 312  Q
            |||| ||   | ||||| ||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||    
T  7078337 aacaaaattatagttcttacaaggttctaaggtggagatctgctttgaagcaatctgcaaatatttctggatttgattcatcacaattttcgtaagtgtt 7078238  T
Q  313 cttt 316  Q
    ||||    
T  7078237 cttt 7078234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 7021088 - 7021391
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 112  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  7021088 agcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgcaga 7021187  T
Q  113 gcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaacatg 212  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||  |||| ||||| ||||||| |||   ||||| ||||||||||| ||||| ||    
T  7021188 gcaaaatatgataggattctattgccagttttctaccaagtagatcctacagaagtacgacatcaaactggtgcttataaagatgcttttgttcaacttg 7021287  T
Q  213 nnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattttccgtaagtgtt 312  Q
            | || ||   | ||||||  ||  |||||| |||||||||   ||||||||||||| ||||||||| |||||  ||||||||||||||| ||    
T  7021288 gacaaaattttagttccgacaaggtggaaaagtggagacatgctttgacaaaatctgccaatatttctggatttcattcaatacattttccgtaagtctt 7021387  T
Q  313 cttt 316  Q
    ||||    
T  7021388 cttt 7021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 7087060 - 7086979
Alignment:
Q  32 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagag 113  Q
    |||||||| |||||||| || | ||||| ||| |||||| | |||||||||||||||||||| ||||| || ||||| ||||    
T  7087060 atttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagag 7086979  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 7070013 - 7069936
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagct 90  Q
    ||||||||||| ||| |  |||||||| |||||||| || | ||||| ||| ||||||  ||||||||||||||||||    
T  7070013 agcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgtttggatgagct 7069936  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 3821613 - 3821534
Alignment:
Q  31 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    |||||||||||||||||| |||  ||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  3821613 catttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgca 3821534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 4003367 - 4003270
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    ||||||||||  |||||||||||||||||||||||| |||  ||||| ||| ||||||||||||||||| || || |||||||||||| | |||||||    
T  4003367 agcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgca 4003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 3812040 - 3811961
Alignment:
Q  31 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    |||||||||||||||||| |||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||||||    
T  3812040 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgca 3811961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 3953038 - 3953138
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 112  Q
    ||||||||||  ||| |||||||||||| ||||||| |||  ||||| ||| ||||||| ||||||||| || || |||||||||||| | |||||||||    
T  3953038 agcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaga 3953137  T
Q  113 g 113  Q
    |    
T  3953138 g 3953138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 4220869 - 4220769
Alignment:
Q  13 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 112  Q
    ||||||||||  ||||| |||||||||||||||||| ||   ||||| ||| ||||||||||||||||| || || ||||| |||||| | |||||||||    
T  4220869 agcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcaga 4220770  T
Q  113 g 113  Q
    |    
T  4220769 g 4220769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 3988237 - 3988159
Alignment:
Q  32 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    ||||||||||||||||| |||  ||| | | | ||||||||||||||||| ||||| |||||||||||| |||||||||    
T  3988237 atttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcgagtgca 3988159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 3916008 - 3916091
Alignment:
Q  25 atcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtg 108  Q
    |||||||||||||||| ||||||| |||  ||||| ||| | |||||||||||||||  | || |||||||||||||| |||||    
T  3916008 atcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtg 3916091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 4011828 - 4011749
Alignment:
Q  31 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    |||||||||||||||||| |||  ||||| ||| | ||||||||||||||| || || |||| ||||||| | |||||||    
T  4011828 catttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgca 4011749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 13399196 - 13399111
Alignment:
Q  25 atcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 110  Q
    |||||| ||||||||| ||||||| |||  ||||| ||| ||||||| ||||||||| || || |||||||||||| | |||||||    
T  13399196 atcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgca 13399111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 19791 - 19738
Alignment:
Q  55 aaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtg 108  Q
    ||||| |||| ||||| | ||||||||||||||  |||||||||||||||||||    
T  19791 aaactatgcaacttcaaaatggtgtttggatgaagttgtgaaaatagtcgagtg 19738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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