View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_high_8 (Length: 320)
Name: NF10447_high_8
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 42696828 - 42696576
Alignment:
| Q |
19 |
cctttggtacaaatataaacttataagttatccagctatacnnnnnnnnnnnnnnnnagggacgttatcaagctataaacttaaaatccgacattttcaa |
118 |
Q |
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| T |
42696828 |
cctttggtacaaatataaacttataagttatccagctataatttttttattttttttagggacgttatcaagctataaacttaaaatccgacattttcaa |
42696729 |
T |
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| Q |
119 |
acaaattctatgtattgagggcttgcattaattcgctatatatagtaagggataattcaataaagacttatgtacagtaaatatagttaaccaacattta |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42696728 |
acaaattctatgtattgagggcttgtattaattcgctatatatagtaagggataattcaataaagacttatgtacaataaatatagttaaccaatattta |
42696629 |
T |
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| Q |
219 |
agtgaaattgaacttagatcttttatggtttgtttgatgagggaaaaacagtt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42696628 |
agtgaaattgaacttagatcttttatggtttgtttgatgagggaaaaacagtt |
42696576 |
T |
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