View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_10 (Length: 382)
Name: NF10447_low_10
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 11592711 - 11592358
Alignment:
| Q |
1 |
ttcattttgatagctataataattgataagaaatccttcaatgggaatgttatttactatttaggttcccatatattgttagtactcctttttatttagc |
100 |
Q |
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| T |
11592711 |
ttcattttgatagctataataattgataagaaatccttcaatgggaatgttatttactatttaggttcccatatatagttagtaatcctttttatttagc |
11592612 |
T |
|
| Q |
101 |
caatgagattttaggaccttgtcatttagcaacataaaagttgaaccaaacttgatgtaatggatcatcatattgtggcatggttgatggaaaattgtg- |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11592611 |
caatgagattttaggaccttgtcatttagcaacataaaagttgaaccaaacttgatgtaatggatcatcatattgtggcatggttgatagaaaattgtgc |
11592512 |
T |
|
| Q |
200 |
ccttgagcatatggtcaaagattcgatcgttagcaagtgtctaaggaagaacccctgttaaaagatgtgttctcttgggtgaatctccgtacctcggaca |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592511 |
ccttaagcatatggtcaaagattcgatcgttagcaagtgtctaaggaagaacccctgttaaaagatgtgttctcttgggtgaatctccgtacctcggaca |
11592412 |
T |
|
| Q |
300 |
attagtctctaccttgtatctgagggacacctcaggcaaccaaaatactcggcg |
353 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11592411 |
attagtctctaccttgtatctgagggacacctcatgcaaccaaaatactcggcg |
11592358 |
T |
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