View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_11 (Length: 372)
Name: NF10447_low_11
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 44282973 - 44282610
Alignment:
| Q |
1 |
tcggacaattcaaatttaagttcaataagccaaattttataaacaactcagaatataagttgtcaggtcttggttcaacggttctgaatgactgactgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
44282973 |
tcggacaattcaaatttaagttcaataagccaaattttataaacaactcaaaatataagttgtctggtcttggttcaacagttctgaatgactgactgcg |
44282874 |
T |
|
| Q |
101 |
gttaccatatgatgttttagtgaataaacaatattgagcaatcttatggcagttatggatatacatggaaacaaaagtacctgccaccatattgaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44282873 |
gttaccatatgatgttttagtgaataaacaatattgagcaatcttatggcagttatggatatacatggaaacaaaagtacctgccaccatattgaaatta |
44282774 |
T |
|
| Q |
201 |
tatcgatgaaggcaatgacttctaatgcaaatgtgttcaatgctgcccatataacagtgaggccaatgtacatacataagaatagccattttggagcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44282773 |
tatcgatgaaggcaatgacttctaatgcaaatgtgttcaatgctgcccatataacagtgaggccaatgtacatacataagaatagccattttggagcaaa |
44282674 |
T |
|
| Q |
301 |
gtaccctccacctttatttgtgcctgttgagagtaggattatgctctgtaatgtctgtgctcct |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44282673 |
gtaccctccacctttatttgtgcctgttgagagtaggattatgctctgtaatgtctgtgatcct |
44282610 |
T |
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