View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_12 (Length: 358)
Name: NF10447_low_12
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 29821525 - 29821193
Alignment:
| Q |
17 |
cataaaataacacagctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttcttcctctcca |
116 |
Q |
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| T |
29821525 |
cataaaataacacagctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttcttcctctcca |
29821426 |
T |
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| Q |
117 |
tgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggattcactgatcatttacgcgctg |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29821425 |
tgcagttcaagttcgaccacacggttatgcagctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggattcactgatcatttacgcgctg |
29821326 |
T |
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| Q |
217 |
cccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaatcaatgcaataaaagattctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29821325 |
cccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaaacatttcagaaaagctaatcaatgcaataaaagattctat |
29821226 |
T |
|
| Q |
317 |
gtttgccatcactattatctcaccagcctatgc |
349 |
Q |
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| T |
29821225 |
gtttgccatcactattatctcaccagactatgc |
29821193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 96 - 353
Target Start/End: Original strand, 29570883 - 29571140
Alignment:
| Q |
96 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
195 |
Q |
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| T |
29570883 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcacctaccatgtctttttgagttttcgaggagaagatacacgcaaaggat |
29570982 |
T |
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| Q |
196 |
tcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaat |
295 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
29570983 |
tcaccgatcatttatgtgctgcccttgaaagaaaagggatcacaacttttaaagatgacaaagaccttgagagagggcaagtcatttcagaaaagctaat |
29571082 |
T |
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| Q |
296 |
caatgcaataaaagattctatgtttgccatcactattatctcaccagcctatgcttct |
353 |
Q |
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| T |
29571083 |
caatgcaataaaagattctatgtttgccatcactattctctcaccagactatgcttct |
29571140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 29830112 - 29829856
Alignment:
| Q |
96 |
gaagcatcttcttcctctccatgcagttcaagttcgaccacacggttatgcacctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
195 |
Q |
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||||| |||||||| ||| | ||||| |||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29830112 |
gaagcctcttcttcttcttcttgcagatcaagttcaaccacaagtttatgcagctaccatgtgtttttgagttttcgaggagaagatacacgcaaaggat |
29830013 |
T |
|
| Q |
196 |
tcactgatcatttacgcgctgcccttgaaagaaaagggatcacaactttcagagatgacaaagaccttgagagagggaaaattatttcagaaaagctaat |
295 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
29830012 |
tcactgatcatttatgtgctgcccttgaaagaaaagggataacaacttttagagatgacaaagaccttgagagagggcaagtcatttcagaaaagctaat |
29829913 |
T |
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| Q |
296 |
caatgcaataaaagattctatgtttgccatcactattatctcaccagcctatgcttc |
352 |
Q |
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||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
29829912 |
caatgcaattaaagattctatgtttgccatcactgtcctctcaccagactatgcttc |
29829856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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