View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_17 (Length: 274)
Name: NF10447_low_17
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 42778168 - 42777913
Alignment:
| Q |
9 |
agcaaagggatacacacaacaataatgaagaggtttatataaagcttcctcttggtgtgacttcctcaaatcctagtcaagtttgcagattactgaaatc |
108 |
Q |
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| T |
42778168 |
agcaaagggatacacacaacaataatgaagaggtttatataaagcttcctcttggtgtgacttcctcaaatcctattcaagtttgcagattactgaaatc |
42778069 |
T |
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| Q |
109 |
tcttatggtttaaaacaagcaagtcaccaatggttctcctaaccatctagttttctaatctcaatttgtttcattcaatccaaatcacatcattccttat |
208 |
Q |
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| T |
42778068 |
tcttatggtttaaaacaagcaagtcaccaatggttctcctaaccatctagttttctaatctcaatttgtttcattcaatccaaatcacatcattccttat |
42777969 |
T |
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| Q |
209 |
tcacaagaaggacttctactatctttacaacgttgacgatttatgtagatgatgtc |
264 |
Q |
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| T |
42777968 |
tcataagaagaacttctactatctttacaacgttgacggtttatgtagatgatgtc |
42777913 |
T |
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