View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_19 (Length: 263)
Name: NF10447_low_19
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 1548276 - 1548024
Alignment:
| Q |
11 |
cacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactg |
110 |
Q |
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| T |
1548276 |
cacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactg |
1548177 |
T |
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| Q |
111 |
gaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttttgccagcat |
210 |
Q |
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| T |
1548176 |
gaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttttgccagcat |
1548077 |
T |
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| Q |
211 |
tgtcaagaccaaccatcacaacctgtgatcagaagcagagaattagaataagc |
263 |
Q |
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| T |
1548076 |
tgtcaagaccaaccatcacaacctgtgatcagaagcagagaattagaataagc |
1548024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 1544423 - 1544163
Alignment:
| Q |
11 |
cacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaac-- |
108 |
Q |
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| T |
1544423 |
cacagacctaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcat-atcaatccaaagaaagtttttaaacaa |
1544325 |
T |
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| Q |
109 |
------tggaaagtcaatt-atgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
201 |
Q |
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| T |
1544324 |
taaaattggaaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
1544225 |
T |
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| Q |
202 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaagcagagaattagaataagc |
263 |
Q |
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| T |
1544224 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaagcagagaattagaataagc |
1544163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 1540383 - 1540287
Alignment:
| Q |
140 |
accaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttttgccagcattgtcaagaccaaccatcacaacctgt |
236 |
Q |
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| T |
1540383 |
accaatagtgggaacagtagataaaacttcaccaatgtgaagtttgtagagaatagtagttttgccagcagcatcaagaccaagcatcacaacctgt |
1540287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 415972 - 416035
Alignment:
| Q |
139 |
caccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgtttt |
202 |
Q |
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| T |
415972 |
caccaattgtaggaacagtagatataacttctccaatgtggagcttgtacaatatagttgtttt |
416035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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