View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10447_low_28 (Length: 243)

Name: NF10447_low_28
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10447_low_28
NF10447_low_28
[»] chr8 (3 HSPs)
chr8 (32-225)||(42186945-42187138)
chr8 (32-225)||(42203996-42204189)
chr8 (111-225)||(42196739-42196853)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 42187138 - 42186945
Alignment:
Q  32 gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42187138 gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt 42187039  T
Q  132 caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42187038 caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttc 42186945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 42204189 - 42203996
Alignment:
Q  32 gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42204189 gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt 42204090  T
Q  132 caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||  |||||||| |||||||| |||||||||    
T  42204089 caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccgatcagtgatgatgtggcgtgagcatttacatagttc 42203996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 42196853 - 42196739
Alignment:
Q  111 taccttagtcccgttcattttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatga 210  Q
    ||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||||||| || ||||| ||||  |||||||||||||||    
T  42196853 taccttagttccgttcattttcaattctgatgtatccttgaaaacctgtttgattgcataaacctcagccaaatcaccagctaccgtggatgtggcatga 42196754  T
Q  211 gcattcacatagttc 225  Q
    |||||||||||||||    
T  42196753 gcattcacatagttc 42196739  T

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