View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10447_low_3 (Length: 481)

Name: NF10447_low_3
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10447_low_3
NF10447_low_3
[»] chr3 (15 HSPs)
chr3 (116-412)||(9358748-9359044)
chr3 (125-253)||(47820896-47821026)
chr3 (122-252)||(28934741-28934868)
chr3 (116-252)||(31525363-31525496)
chr3 (123-246)||(28956951-28957074)
chr3 (116-178)||(52076136-52076198)
chr3 (121-176)||(10454357-10454412)
chr3 (122-258)||(20701139-20701275)
chr3 (116-177)||(43073045-43073106)
chr3 (121-178)||(44656229-44656286)
chr3 (129-252)||(53349401-53349523)
chr3 (192-252)||(55166896-55166955)
chr3 (121-177)||(8431422-8431478)
chr3 (192-252)||(8431491-8431549)
chr3 (192-252)||(43073120-43073178)
[»] chr1 (14 HSPs)
chr1 (153-291)||(43268640-43268778)
chr1 (123-412)||(43460533-43460831)
chr1 (116-263)||(19472786-19472933)
chr1 (116-252)||(12172954-12173087)
chr1 (124-261)||(8462976-8463113)
chr1 (116-252)||(26990601-26990734)
chr1 (116-176)||(38548750-38548810)
chr1 (125-252)||(42442015-42442142)
chr1 (116-166)||(28447802-28447852)
chr1 (192-245)||(47028937-47028990)
chr1 (116-175)||(31833965-31834024)
chr1 (130-177)||(46757378-46757425)
chr1 (124-177)||(26385035-26385087)
chr1 (192-253)||(41955963-41956024)
[»] chr8 (13 HSPs)
chr8 (116-300)||(30836127-30836320)
chr8 (30-99)||(31943953-31944022)
chr8 (116-252)||(22839250-22839387)
chr8 (122-246)||(38086419-38086544)
chr8 (121-177)||(40930834-40930890)
chr8 (121-245)||(5200486-5200609)
chr8 (121-252)||(24200626-24200753)
chr8 (125-177)||(25829272-25829324)
chr8 (121-177)||(13959223-13959279)
chr8 (121-169)||(584139-584187)
chr8 (187-252)||(10124859-10124925)
chr8 (121-151)||(7845138-7845168)
chr8 (128-177)||(44362940-44362989)
[»] chr4 (9 HSPs)
chr4 (122-392)||(16662312-16662584)
chr4 (121-246)||(32183282-32183409)
chr4 (121-246)||(16572074-16572198)
chr4 (116-258)||(25641268-25641413)
chr4 (116-177)||(15186980-15187041)
chr4 (116-175)||(47571570-47571629)
chr4 (116-178)||(42390771-42390833)
chr4 (122-156)||(45511407-45511441)
chr4 (199-251)||(42390855-42390906)
[»] chr7 (15 HSPs)
chr7 (121-252)||(30655602-30655734)
chr7 (116-252)||(46691844-46691981)
chr7 (126-263)||(49035862-49036001)
chr7 (121-246)||(31424776-31424902)
chr7 (123-245)||(41702870-41702992)
chr7 (121-177)||(1039067-1039123)
chr7 (125-251)||(33320704-33320825)
chr7 (122-177)||(36615808-36615863)
chr7 (121-178)||(42598057-42598114)
chr7 (125-171)||(32679023-32679069)
chr7 (124-177)||(19471096-19471149)
chr7 (124-177)||(22197744-22197797)
chr7 (124-177)||(22240024-22240077)
chr7 (192-252)||(22197668-22197727)
chr7 (192-252)||(22240094-22240153)
[»] chr5 (11 HSPs)
chr5 (125-263)||(23172981-23173118)
chr5 (124-252)||(10431056-10431185)
chr5 (123-176)||(22887284-22887337)
chr5 (122-252)||(819134-819261)
chr5 (116-167)||(9597753-9597804)
chr5 (125-176)||(9931804-9931855)
chr5 (123-175)||(25539896-25539947)
chr5 (122-177)||(3677795-3677849)
chr5 (191-252)||(2292161-2292223)
chr5 (193-258)||(9931877-9931941)
chr5 (121-172)||(42241593-42241644)
[»] chr2 (5 HSPs)
chr2 (121-253)||(41419616-41419748)
chr2 (120-253)||(14732343-14732474)
chr2 (130-252)||(41378216-41378332)
chr2 (121-246)||(22649069-22649194)
chr2 (121-175)||(38908743-38908797)
[»] chr6 (9 HSPs)
chr6 (116-246)||(15859100-15859234)
chr6 (124-252)||(10246910-10247035)
chr6 (121-252)||(11546765-11546895)
chr6 (125-252)||(34761160-34761287)
chr6 (116-177)||(6575797-6575858)
chr6 (124-178)||(33984833-33984887)
chr6 (116-252)||(33112714-33112851)
chr6 (121-167)||(14459932-14459978)
chr6 (192-258)||(33984747-33984813)
[»] scaffold0209 (1 HSPs)
scaffold0209 (121-169)||(12899-12947)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 116 - 412
Target Start/End: Original strand, 9358748 - 9359044
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 215  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||        || ||||||||||||||||||||||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaa-catagaaggggaaatcggttgccgcacaa 9358846  T
Q  216 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaagcacccaaaacnnnn 315  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        
T  9358847 acaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaa 9358946  T
Q  316 nnnggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 412  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9358947 aaaggcaccaagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccagccgagccaaaaccactaaaacagcaggtccc 9359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 47821026 - 47820896
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgcacaaacaccga 222  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||     
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccgg 47820927  T
Q  223 ctccaacaaaaacccctttaaaaaccaccca 253  Q
    ||| |||||||||||||||||||||||||||    
T  47820926 ctcgaacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 28934741 - 28934868
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 221  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||| |||||||||||||||||  |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaaca-aaacaaggggaaatcggttgc--cacaaacaccg 28934837  T
Q  222 actccaacaaaaacccctttaaaaaccaccc 252  Q
     ||| |||||||||||||| |||||||||||    
T  28934838 gctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 31525496 - 31525363
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 215  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 31525399  T
Q  216 acaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    ||| || ||| |||||||||||| |||||||||||||    
T  31525398 acaacggctcgaacaaaaacccc-ttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 28957074 - 28956951
Alignment:
Q  123 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 222  Q
    |||||||||||||||||||||| |||||| |||| |||| |||||||||||||           ||||||||||||||||||||||| |||||||||||     
T  28957074 caaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaacaccgg 28956975  T
Q  223 ctccaacaaaaacccctttaaaaa 246  Q
    ||| ||||||||||||||||||||    
T  28956974 ctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 52076198 - 52076136
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 178  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 176  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 258
Target Start/End: Complemental strand, 20701275 - 20701139
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||         |||| |||||||||||| ||||| ||| |||  |    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacac-aactac 20701177  T
Q  221 gactccaacaaaaacccctttaaaaaccacccacaaac 258  Q
    | ||| |||||||||||||| |||||||||||| ||||    
T  20701176 ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 43073045 - 43073106
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 43073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 44656229 - 44656286
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 178  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 53349523 - 53349401
Alignment:
Q  129 attattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaa 228  Q
    ||||||||||||||||| | ||| |||||||||||||| || ||||||          || | ||||| |||||||||||||||||||||||| ||| ||    
T  53349523 attattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggctcaaa 53349424  T
Q  229 caaaaacccctttaaaaaccaccc 252  Q
    |||||||||| |||||||||||||    
T  53349423 caaaaacccc-ttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    ||||||||||||||||||||||||||   | ||| |||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaacccc-ttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 8431422 - 8431478
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||||||||||||| | ||| |||||||||| ||| ||||||| |||||||| ||||    
T  8431422 ggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatgga 8431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||||||||||||||  || |||||||| ||| |||||||||||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 43073120 - 43073178
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    ||||||||||||||||||  | |||||||| ||| |||||||||||| |||||||||||||    
T  43073120 aaggggaaatcggttgcctta-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 43268640 - 43268778
Alignment:
Q  153 agaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43268640 agaaacactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T
Q  253 acaaaccaaggtgccgcctataaacgtaacactgtaaac 291  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  43268740 acaaacaaaggtgccgtctataaacgtaacactgtaaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 123 - 412
Target Start/End: Complemental strand, 43460831 - 43460533
Alignment:
Q  123 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg----gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaa-c 217  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||  ||||    ||         | ||||||||||||||||||||   ||||| |    
T  43460831 caaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaatcggttgcgatacaaaac 43460732  T
Q  218 accgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaa-cgtaacactgtaaa--caccaggaaagcacccaaaacnnn 314  Q
    || ||||| |||||||||||||| ||||||||||  ||||| ||||||||||||| ||| ||||||||   |||  |||||||||||||||||||||       
T  43460731 actgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacacaaaaaacaccaggaaagcacccaaaaccaa 43460632  T
Q  315 nnnnggcac-aagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 412  Q
        | ||| ||||||||||||||||||||||||||| |||  ||||||||||| ||||||| |||| ||||||||||| |  || |||||||||||||    
T  43460631 acgagacaccaagcaatgaggctgaagtatactatcatgaaagtagcatactcccacctcactaccagccgagccaaaagccctacaacagcaggtccc 43460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 116 - 263
Target Start/End: Complemental strand, 19472933 - 19472786
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 215  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||        |||||||||||||||| ||||||  ||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaa 19472834  T
Q  216 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaagg 263  Q
    || ||| ||| |||||||| |||||||||||||||||| |||| ||||    
T  19472833 actccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 12173087 - 12172954
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 215  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 12172990  T
Q  216 acaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    ||| |  ||| |||||||||||| |||||||||||||    
T  12172989 acatcagctcgaacaaaaacccc-ttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 8462976 - 8463113
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 223  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||        || | ||||| |||||||||||| || ||||  || |    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggc 8463075  T
Q  224 tccaacaaaaacccctttaaaaaccacccacaaaccaa 261  Q
    || |||||||||||||| |||||||||||| |||||||    
T  8463076 tcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 26990734 - 26990601
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 215  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||         || | ||||| |||||| |||||||||||    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaagggaaaatcgattgccgcacaa 26990637  T
Q  216 acaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
     ||||| ||| |||||||| ||| |||||||||||||    
T  26990636 gcaccggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 38548810 - 38548750
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 176  Q
    |||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 42442015 - 42442142
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg-gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 223  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||  |         |||| || |||||||||||||||    ||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgac 42442114  T
Q  224 tccaacaaaaacccctttaaaaaccaccc 252  Q
    || |||||||||||| |||||||||||||    
T  42442115 tcgaacaaaaacccc-ttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataa 166  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaa 245  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 31834024 - 31833965
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 175  Q
    |||| |||||||||||||||||||||||  |||||| ||| ||||||| |||||||||||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 46757425 - 46757378
Alignment:
Q  130 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgga 46757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 26385087 - 26385035
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||| |||||||    
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtgga 26385035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccca 253  Q
    ||||||||||||||||||  |  ||||||| ||| |||||||| ||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 116 - 300
Target Start/End: Original strand, 30836127 - 30836320
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaat----aagctcgggtggagnnnnnnnncaaa-----gaaggggaaatcggtt 206  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    |||||||| |||||         |||     ||||||||||||| ||    
T  30836127 gaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaaggggaaatcgatt 30836226  T
Q  207 gccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaa 300  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30836227 gccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgtaaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 31944022 - 31943953
Alignment:
Q  30 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacagtgggagaatcaatgtattgttatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31944022 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacaatgggagaatcaatgtattgttatt 31943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 22839387 - 22839250
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgca-ca 214  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||        |||||||| ||||||||||||||  |  |    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatataa 22839288  T
Q  215 aacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||| || ||| |||||||| |||||||||||||||||    
T  22839287 aacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 38086419 - 38086544
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||         |||||||||| ||||||||||||  |||||| |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  221 gactccaacaaaaacccctttaaaaa 246  Q
    | ||| ||||||||||||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 40930834 - 40930890
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 40930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 5200486 - 5200609
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| | ||||||||        || | ||||| |||||||||||||||||||||||    
T  5200486 ggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggag-aaaaaaacatacaagggaaaatcggttgccgcacaaacacc 5200584  T
Q  221 gactccaacaaaaacccctttaaaa 245  Q
    | ||| |||||||||||||| ||||    
T  5200585 ggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 24200626 - 24200753
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||         || | ||||||||||||||||||||| |||||||    
T  24200626 ggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaaggggaaatcggttgccgcaaaaacacc 24200723  T
Q  221 gactccaacaaaaacccctttaaaaaccaccc 252  Q
    | ||| ||||||||| |  |||||||||||||    
T  24200724 ggctcgaacaaaaacac--ttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 25829272 - 25829324
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 25829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 13959223 - 13959279
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  13959223 ggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgga 13959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 584139 - 584187
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 169  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  584139 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 10124925 - 10124859
Alignment:
Q  187 caaagaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||| ||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  10124925 caaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 7845168 - 7845138
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgc 151  Q
    |||||||||||||||||||||||||||||||    
T  7845168 ggcaaaatattattaaccaacaagcccgtgc 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 44362940 - 44362989
Alignment:
Q  128 tattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||||||||||||||| || |||| ||||||||||||||| |||| ||||    
T  44362940 tattattaaccaacaatcctgtgcaagaagcactaataagttcggatgga 44362989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 122 - 392
Target Start/End: Original strand, 16662312 - 16662584
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacacc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||         | |||||||| ||||| ||||||  || ||||||     
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtgga---aaaaaactaagaagggaaaatctgttgccatacaaaacact 16662408  T
Q  221 gactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctat-aaacgtaa--cactgtaaacaccaggaaagcacccaaaacnnnnnn 317  Q
    | |||  ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||   |||||||| |||| ||||||||||          
T  16662409 ggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaaccaaacg 16662508  T
Q  318 nggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaa 392  Q
     |||| ||||||||||||||||||||||  |||| |||  ||||||||||| ||||||| |||| |||||||||||    
T  16662509 aggcaccaagcaatgaggctgaagtatatcatcatgaaagtagcatactccgacctcactaccagccgagccaaaa 16662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 32183409 - 32183282
Alignment:
Q  121 ggcaaaatattattaaccaa-caagcccgtgcgagaagcactaataagctcgggtgga-gnnnnnnnncaaagaaggggaaatcggttgccgcacaaaca 218  Q
    |||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||| |        |||||||||||||||||||||||  |||||||    
T  32183409 ggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccatacaaaca 32183310  T
Q  219 ccgactccaacaaaaacccctttaaaaa 246  Q
    ||| ||| ||||||||||||||||||||    
T  32183309 ccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          | | ||||||||||||||||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  221 gactccaacaaaaacccctttaaaaa 246  Q
    |  || ||| ||||||||||||||||    
T  16572098 ggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 25641268 - 25641413
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 213  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||          ||||||||||||||| |||||||  ||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccatac 25641367  T
Q  214 aaacaccgactccaacaaaaaccccttt-aaaaaccacccacaaac 258  Q
     |||| || ||| ||||||||||| ||| |||||||||||| ||||    
T  25641368 taacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 15186980 - 15187041
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 47571570 - 47571629
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 175  Q
    |||| ||||||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 42390771 - 42390833
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 178  Q
    |||| ||| |||| |||||  ||||||||||||||| ||| | ||||||||||||||||||||    
T  42390771 gaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggag 42390833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 45511407 - 45511441
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaa 156  Q
    |||||||||||||||||||||||||||||| ||||    
T  45511407 gcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  199 aatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacc 251  Q
    |||||||||||||  |||||||| ||| |||||||||||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaacccc-ttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 30655602 - 30655734
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 219  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||| |||||||||||||||||| ||| ||| |     
T  30655602 ggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaaatat 30655701  T
Q  220 cgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||| |||||||||| ||| |||||||||||    
T  30655702 cgactcgaacaaaaacctcttaaaaaaccaccc 30655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 46691844 - 46691981
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 213  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||          || | |||||||||||||||||| ||     
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacat 46691943  T
Q  214 aaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||||| ||| |||||||||||| |||||||||||||    
T  46691944 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 49035862 - 49036001
Alignment:
Q  126 aatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 223  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||          |||| |||||||||||||||||| || ||||||||      
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggt 49035961  T
Q  224 tccaacaaaaacccctttaaaaaccacccacaaaccaagg 263  Q
    || |||||||||||||| |||||||||||| |||| ||||    
T  49035962 tcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 31424776 - 31424902
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 219  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||        |||||||||||||||||||||||   | ||||||    
T  31424776 ggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaacac 31424875  T
Q  220 cgactccaacaaaaacccctttaaaaa 246  Q
    || ||| | ||||||||||||||||||    
T  31424876 cggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 41702992 - 41702870
Alignment:
Q  123 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 222  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||| | ||||||||        || | |||||||| |||||||||||||||||||||     
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  223 ctccaacaaaaacccctttaaaa 245  Q
    ||| |||||||||||||| ||||    
T  41702892 ctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 1039067 - 1039123
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1039067 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 33320825 - 33320704
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 224  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||           ||| |||||||||| |||||||  |||||||||| ||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg-----gaaaaaaaacaaggggaaattggttgccttacaaacaccggct 33320731  T
Q  225 ccaacaaaaacccctttaaaaaccacc 251  Q
    | ||||||| |||||| ||||||||||    
T  33320730 cgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 36615808 - 36615863
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgga 36615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 42598114 - 42598057
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 178  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  42598114 ggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggag 42598057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 32679069 - 32679023
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcg 171  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||    
T  32679069 aaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 19471096 - 19471149
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||| ||||||||| |||| ||  |||||||||||||||||||||    
T  19471096 aaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtgga 19471149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 22197797 - 22197744
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 22240024 - 22240077
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 22197727 - 22197668
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22197727 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 22240094 - 22240153
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22240094 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 263
Target Start/End: Original strand, 23172981 - 23173118
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 224  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||         |||| |||| |||||| ||||||  | |||||||| ||    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggct 23173080  T
Q  225 ccaacaaaaacccctttaaaaaccacccacaaaccaagg 263  Q
    | ||| |||||||| |||||||||||||| |||| ||||    
T  23173081 cgaac-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 10431185 - 10431056
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn-caaagaaggggaaatcggttgccgcacaaacaccga 222  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||         |||| |||| ||||||||||||| ||||||||||||    
T  10431185 aaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgccacacaaacaccga 10431086  T
Q  223 ctccaacaaaaacccctttaaaaaccaccc 252  Q
    ||| |||||||||| | | |||||||||||    
T  10431085 ctcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  123 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 819134 - 819261
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 221  Q
    |||||||||||||| |||| ||| |||||  ||||||||||||||| |||||||||          ||| || |||||||||||||||  |||||||||     
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaata-aaacaaagggaaatcggttgcc--acaaacacca 819230  T
Q  222 actccaacaaaaacccctttaaaaaccaccc 252  Q
    |||| |||||||||||||| |||||||||||    
T  819231 actcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 167  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 9931804 - 9931855
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 176  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  123 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 175  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 3677795 - 3677849
Alignment:
Q  122 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  3677795 gcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtgga 3677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  191 gaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 9931877 - 9931941
Alignment:
Q  193 aggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 258  Q
    ||||||||||||||||||||||||||||  ||| ||||||||| || | |||||||||||| ||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaacacc-tcaaaaaccacccaaaaac 9931941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 42241593 - 42241644
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgg 172  Q
    |||||||||||||||||||| ||| ||| || ||| ||||||||||||||||    
T  42241593 ggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcgg 42241644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 41419748 - 41419616
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaa-agaaggggaaatcggttgccgcacaaacac 219  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||          || | ||||||||||||||||||  |  |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  220 cgactccaacaaaaacccctttaaaaaccaccca 253  Q
    |||||| |||||||||||| ||||||||||||||    
T  41419648 cgactcgaacaaaaacccc-ttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 14732343 - 14732474
Alignment:
Q  120 aggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacac 219  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |         | | ||||||||||||||| ||||| ||| ||    
T  14732343 aggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg-gaaaaaaataatacaaggggaaatcggttaccgcaaaaatac 14732441  T
Q  220 cgactccaacaaaaacccctttaaaaaccaccca 253  Q
    |  ||| |||||||||||| ||||||||||||||    
T  14732442 cagctcgaacaaaaacccc-ttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  130 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaac 229  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||         |||||   ||||||||||||||| ||||||| ||| ||| ||     
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgga---aaaatacaaag---gggaaatcggttgccacacaaactccggctcgaat 41378309  T
Q  230 aaaaacccctttaaaaaccaccc 252  Q
    |||||||||||||||||||||||    
T  41378310 aaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 22649069 - 22649194
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgcc-gcacaaacac 219  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| |||        |||||||||||||||||||||||    |||||||    
T  22649069 ggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagag-aaaaaaacaaagaaggggaaatcggttgccattccaaacac 22649167  T
Q  220 cgactccaacaaaaacccctttaaaaa 246  Q
    || ||  | ||||||||||||||||||    
T  22649168 cggcttgatcaaaaacccctttaaaaa 22649194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 38908797 - 38908743
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 175  Q
    |||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||    
T  38908797 ggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 15859234 - 15859100
Alignment:
Q  116 gaataggcaaaatattattaaccaa--caagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgc 211  Q
    |||| |||||||||||||||| |||  ||||||||||| ||  ||||||||||||||||||||||          |||||||||||||||||||||||      
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgccaa 15859135  T
Q  212 acaaacaccgactccaacaaaaacccctttaaaaa 246  Q
    |||||||||| ||| ||||||||||||||||||||    
T  15859134 acaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 10247035 - 10246910
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 223  Q
    |||||||||||||||||||||||||||| ||||||||||| | | || |||||||        |||||||||| |||||||||| | ||||| ||||| |    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaa--caaagaagggaaaatcggttgtcacacaa-caccggc 10246939  T
Q  224 tccaacaaaaacccctttaaaaaccaccc 252  Q
    || ||||||||||||||||||||||||||    
T  10246938 tcgaacaaaaacccctttaaaaaccaccc 10246910  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 11546895 - 11546765
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 220  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||||||||| |||        ||||||||| ||||||||||| |  |||||||||    
T  11546895 ggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggt-gagaaaaaaaacaaagaaggagaaatcggttgtcatacaaacacc 11546797  T
Q  221 gactccaacaaaaacccctttaaaaaccaccc 252  Q
    | ||| ||||||||| |||| |||||| ||||    
T  11546796 ggctcgaacaaaaactccttaaaaaactaccc 11546765  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 34761287 - 34761160
Alignment:
Q  125 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 224  Q
    |||||||||||| | |||||||||||| || |||||||||||||||||||||          ||||||||  ||||||||||| |  |||||||||||||    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtcatacaaacaccgact 34761188  T
Q  225 ccaacaaaaacccctttaaaaaccaccc 252  Q
    | ||||||||| |||| |||||||||||    
T  34761187 cgaacaaaaactccttaaaaaaccaccc 34761160  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 6575858 - 6575797
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 177  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 33984887 - 33984833
Alignment:
Q  124 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 178  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||||||||||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtggag 33984833  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 33112714 - 33112851
Alignment:
Q  116 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg-agnnnnnnnncaaagaaggggaaatcggttgccgcaca 214  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||| || |         |||  ||||||||||||||||||  |||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcggttgccataca 33112813  T
Q  215 aacaccgactccaacaaaaacccctttaaaaaccaccc 252  Q
    |||   | ||| |||||||||||||| |||||||||||    
T  33112814 aactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 14459978 - 14459932
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 167  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  14459978 ggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  192 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 258  Q
    ||||||||||||||||||  |||||||| |  || |||||||||||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

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Target: scaffold0209 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 12899 - 12947
Alignment:
Q  121 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 169  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  12899 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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