View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_31 (Length: 239)
Name: NF10447_low_31
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44689980 - 44689757
Alignment:
| Q |
1 |
aatatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689980 |
aatatattttggccggattgatgtttcatcagggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagt |
44689881 |
T |
|
| Q |
101 |
accatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnttagcatacttgtataatcatgttttttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
44689880 |
accatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcaaaaaaattagcatacttgtataatcatcttttttgtt |
44689781 |
T |
|
| Q |
201 |
tggtacaaaatgacctgcattatt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
44689780 |
tggtacaaaatgacctgcattatt |
44689757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 44680713 - 44680505
Alignment:
| Q |
3 |
tatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtac |
102 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680713 |
tatattttggccgcattgatgtttcatcaaggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtac |
44680614 |
T |
|
| Q |
103 |
catgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnttagcatacttgtataatcatgttttttgtttg |
202 |
Q |
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| T |
44680613 |
catgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactc--aaaaataagcatacttgtataatcaagttttttgtttg |
44680516 |
T |
|
| Q |
203 |
gtacaaaatga |
213 |
Q |
| |
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||||||||||| |
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| T |
44680515 |
gtacaaaatga |
44680505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 41983632 - 41983801
Alignment:
| Q |
41 |
gaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatccctt |
140 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||| | ||| || |||||| ||| |||| |
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| T |
41983632 |
gaaattaatatttttcaaatgttgggacaaactacactgttggggaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctc |
41983731 |
T |
|
| Q |
141 |
gtgagaggtatatgtctaactcnnnnnnnttagcatacttgtataatcatgttttttgtttggtacaaaatgac |
214 |
Q |
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|| ||||||| ||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41983732 |
gt--gaggtatgtgtttaact--taaaaatttgcatacttgtataatcaagttttttgtttggtacaaaatgac |
41983801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 9455661 - 9455732
Alignment:
| Q |
39 |
aagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtaccatgataa |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| || ||| |||||| ||||||||||||||| |
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| T |
9455661 |
aagaaaataatatttttcaaatgttgggacaaattacattgttggagaagcatcttcttagtaccatgataa |
9455732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 233713 - 233820
Alignment:
| Q |
8 |
tttggccagattgatgtttcatcagggatag-aagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtaccatg |
106 |
Q |
| |
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||||||||||||||||||| ||| | ||| ||||||||||||||||| ||||||| || |||||| | ||| |||||| |||||| |||||| || | |
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| T |
233713 |
tttggccagattgatgtttatgcagaggtagcaagaaattaatatttttaaaatgttagggtaaattaaattgttggggaagcatcttcttagtagcaag |
233812 |
T |
|
| Q |
107 |
ataagtta |
114 |
Q |
| |
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|||||||| |
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|
| T |
233813 |
ataagtta |
233820 |
T |
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