View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10447_low_34 (Length: 222)

Name: NF10447_low_34
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10447_low_34
NF10447_low_34
[»] chr2 (3 HSPs)
chr2 (14-90)||(15611745-15611821)
chr2 (143-204)||(15611631-15611692)
chr2 (139-204)||(15628701-15628766)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 15611821 - 15611745
Alignment:
Q  14 catagggcatagcaagaaaacaaccaaaaggacaaaagcaccatgtgcaaacggccaacctaccactccctacaaga 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15611821 catagggcatagcaagaaaacaaccaaaaggacaaaagcaccatgttcaaacggccaacctaccactccctacaaga 15611745  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 15611692 - 15611631
Alignment:
Q  143 atttccaatcggcttccccaacctagatgcataatactttcaacatacaagcactccaatag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15611692 atttccaatcggcttccccaacctagatgcataatactttcaacatacaagcactccaatag 15611631  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 15628766 - 15628701
Alignment:
Q  139 aacaatttccaatcggcttccccaacctagatgcataatactttcaacatacaagcactccaatag 204  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  15628766 aacaatttctaattggcttccccaacctagatgcatcatactttcaacacacaagcactccaatag 15628701  T

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