View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_35 (Length: 211)
Name: NF10447_low_35
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_35 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 21488 - 21667
Alignment:
| Q |
18 |
cctcaaaacactctttctataagattctactttgcttcatatataagagtatgaaaagtaatagaagaagaaaacagaatcatgattgtgaaaggttgaa |
117 |
Q |
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| T |
21488 |
cctcaaaacactctttctataagattctactttgcttcatatataagagtatgaaaagtaatagaagaagaaaacagaatcatgattgtgaaaggttgaa |
21587 |
T |
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| Q |
118 |
aatatcgagagaaagggacttgacaaaggaagagtctgcaaattccttaacatgtcactgataataccttatgccctatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21588 |
aatatcgagagaaagggacttgacaaaggaagagtctgcaaattccttaacatgtcactgataataccttatgccctatg |
21667 |
T |
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