View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_4 (Length: 451)
Name: NF10447_low_4
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 8683249 - 8683688
Alignment:
| Q |
1 |
ctaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttctattgttcaggcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8683249 |
ctaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttctattgttcaggcta |
8683348 |
T |
|
| Q |
101 |
gcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctg-ttttttcgtacatgttataaatggaaaatgtttcactct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8683349 |
gcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctgtttttttcgtacatgttataaatggaaaatgtttcactct |
8683448 |
T |
|
| Q |
200 |
ttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgagagggattcaaggtgctttgatcataagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8683449 |
ttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgagagggattcaaggtgctttgatcataagt |
8683548 |
T |
|
| Q |
300 |
tcaagtttccaaatggctattggannnnnnnnnnnnnggagaaatgctgtcaggttagtatctgtaacgtcttttgtttcgatttttatgtaaatctttg |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8683549 |
tcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggttagtatctgtaacttcttttgtttcgatttttatgtaaatctttg |
8683648 |
T |
|
| Q |
400 |
atttgttatcttatatgttcattgattcattcacaggttc |
439 |
Q |
| |
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| T |
8683649 |
atttgttatcttatatgttcattgattcattcacaggttc |
8683688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 47579555 - 47579685
Alignment:
| Q |
4 |
agcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttctattgttcaggctagca |
103 |
Q |
| |
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||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||||||||| |||||| ||||| || || || |||||| ||||||| |
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| T |
47579555 |
agcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcagctgttcaagctagca |
47579654 |
T |
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| Q |
104 |
gatataatgcatatacagatccttatgaggt |
134 |
Q |
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|||| | | |||||||||||||||||||||| |
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| T |
47579655 |
gatacagttcatatacagatccttatgaggt |
47579685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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