View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_5 (Length: 433)
Name: NF10447_low_5
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 38622276 - 38622689
Alignment:
| Q |
1 |
taagcacattccagaaactaaaagcttgaaaattgtacaaataattaatgaaattaattacaaaagtaggcaagtaattaattaaaacacaaatacctgt |
100 |
Q |
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| T |
38622276 |
taagcacattccagaaactaaaagcttgaaaattgtacaaataat-aatgaaattaataacaaa-gtaggcaagtaattaagtaaaacacaaatacctgt |
38622373 |
T |
|
| Q |
101 |
aaaggagtcaaattaatgcagattggttgacagtttcccttaggcttgaagcaaacacaagtgagtcctttaccaatccaataaggtgaaccacatgtcg |
200 |
Q |
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| T |
38622374 |
aaaggagtcaaattaatgcagattggttgacagtttcccttaggcttgaagcaaacacaagtgagtcctttaccaatccaataaggtgaaccacatgttg |
38622473 |
T |
|
| Q |
201 |
cagcatcatctgcatataaccaatcagaagagttcctcatttcaaccctcttctttttcacaatgccaatatcactaagttgaagtatggcctttattat |
300 |
Q |
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| T |
38622474 |
cagcatcatctgcatataaccaatcagaagagttcctcatttcaaccctcttctttttcacaatgccaatatcactaagttgaagtatggcctttattat |
38622573 |
T |
|
| Q |
301 |
acaacaagttgattacaaagcaggtaatcaaacagtatagtggagaagaaactgtggtaattttttaatagtttgcattgtcgtcttttgccccgacaaa |
400 |
Q |
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| T |
38622574 |
acaacaagttgattacaaagcaggtaatcaaacagtatagtggagaagaaagtgtggtaatttttcaatagtttgcattgtcgtcttttgccccgacaaa |
38622673 |
T |
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| Q |
401 |
acataaaaagcaaaat |
416 |
Q |
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| T |
38622674 |
acataaaaagcaaaat |
38622689 |
T |
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