View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_8 (Length: 422)
Name: NF10447_low_8
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 11593104 - 11592712
Alignment:
| Q |
19 |
cccctgacccaacaagaagcattcttccagccagggcagtgataaagtctatagatagaatcaaagggccttttgaccctgccaatatagagtatctgca |
118 |
Q |
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| T |
11593104 |
cccctgacccaacaagaagcattcttccagccagggcagtgataaagtctatagatagaatcaaagggccttttgaccctgccaatatagagtatctgca |
11593005 |
T |
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| Q |
119 |
gaaggatgtgccatgggaagaattcaagacaaatcttctttctagctaaagacagtgtagttagcttcttaaannnnnnncaataattttttctctgtga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11593004 |
gaaggatgtgccatgggaagaattcaagacaaatcttctttctagctaaagacagtgtagttagcttcttaaatttttttcaataattttttctctgtga |
11592905 |
T |
|
| Q |
219 |
tttaatttgtatactttgtcgccgtaacaaattttatattgtcaaacaaatataaccgtgagatcattaaaaatgttcgactttaattataacaacttta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592904 |
tttaatttgtatactttgtcgccgtaacaaattttatattgtcaaacaaatataaccttgagatcattaaaaatgttcgactttaattataacaacttta |
11592805 |
T |
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| Q |
319 |
aatatcgcatctatgctgatttctgattgattgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttcat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592804 |
aatatcgcatctatgctgatttctgattgattgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttcat |
11592712 |
T |
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