View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10447_low_9 (Length: 408)
Name: NF10447_low_9
Description: NF10447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10447_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 43559437 - 43559190
Alignment:
| Q |
18 |
tgaatttctcaattttgcgaagacaaagaacatgatctccctcacccgacaatgtttgatattccgtcctttgttgacagtttgctagcgcacagacaat |
117 |
Q |
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| T |
43559437 |
tgaatttatcaattttgcaaagacaaagaacatgatctccctcacccgacaatgtttgatattccgtcctttgttgacagtttgctagcgcacagacaat |
43559338 |
T |
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| Q |
118 |
gaatatacatacattgattgatgatagttatatatagtatgaatttggataacaaaacaatcttaacatatttgtttttaccaaacaatgatttaatttt |
217 |
Q |
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| T |
43559337 |
gaatatacatacattgattgatgatagttatatatagtatgaatttggataacaaaacaatcttaacatatttgtttttaccaaacaatgatttaatttt |
43559238 |
T |
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| Q |
218 |
cctcatgctgttgctgtgtatgccaacagcatatatacaaccaacaag |
265 |
Q |
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| T |
43559237 |
cctcatgctgttgctgtgtatgccaacagcatatatacaaccaacaag |
43559190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 43559141 - 43559059
Alignment:
| Q |
314 |
aaataattgttcactcacatgttgacacttatttcaaattattcaacaacttttttctttgacctgactgataccatgttcat |
396 |
Q |
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| T |
43559141 |
aaataattgttcactcacatgttgacacttatttcaaattattcaacaacttttttctttgacctgactgataccatgttcat |
43559059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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