View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_1 (Length: 794)
Name: NF10448_1
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 197 - 720
Target Start/End: Complemental strand, 26946763 - 26946248
Alignment:
| Q |
197 |
gcacttcacccaactcggttcgtaaccgcccgcgcgattcaacctcgagaactcaccggcgttgaaggccgaatcagcgaaccttctgaagaagctaaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26946763 |
gcacttcacccaactcggttcgtaaccgcccgcgcgattcaacctcgagaactcaccggcgatgaaggccgaatcagcgaaccttctgaagaagctaaaa |
26946664 |
T |
|
| Q |
297 |
ttgaaaatgaagcggcgacacagggtgttgaaaaggaactagcgaatcaaggtatatggattcaattgaaggaaattgttaaatttacagcacctgcaac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946663 |
ttgaaaatgaagcggcgacacagggtgttgaaaaggaactagcgaatcaaggtatatggattcaattgaaggaaattgttaaatttacagcacctgcaac |
26946564 |
T |
|
| Q |
397 |
tggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtattgatagttta |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946563 |
tggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtattgatagttta |
26946464 |
T |
|
| Q |
497 |
gttactataattaaataatttgttgctttgaatctatgagattatgagattttgcattgtttatattaggatttgatttcataatgagaaattattgagt |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946463 |
gttactataattaaataatttgttgctttgaatctatga--------gattttgcattgtttatattaggatttgatttcataatgagaaattattgagt |
26946372 |
T |
|
| Q |
597 |
tattgtgtttttaatttcgcttgtttaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatgg |
696 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946371 |
tattgtttttttaatttcgcttgtgcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatgg |
26946272 |
T |
|
| Q |
697 |
ttgctactgccctagctaaacagg |
720 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26946271 |
ttgctactgccctagctaaacagg |
26946248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 26946935 - 26946827
Alignment:
| Q |
25 |
cttttccctccaccaaaaaatggcactcaaaatcatcccatcaacacttcttcttcctcgctctcttcaccactttcctccccgccaaaaccctaatctc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946935 |
cttttccctccaccaaaaaatggcactcaaaatcatcccatcgatacttcttcttcctcgctctcttcaccactttcctccccgccaaaaccctaatctc |
26946836 |
T |
|
| Q |
125 |
aaatcactt |
133 |
Q |
| |
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||||||||| |
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| T |
26946835 |
aaatcactt |
26946827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 348 - 487
Target Start/End: Complemental strand, 26991489 - 26991350
Alignment:
| Q |
348 |
gtatatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttat |
447 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| | |||||||| ||| |||||| |||| ||||||||||||||| | || |||||||||||| | |
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| T |
26991489 |
gtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgt |
26991390 |
T |
|
| Q |
448 |
tggtcagggaagttcaattgagcttgctgctttaggtatt |
487 |
Q |
| |
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|||||| |||||||| ||||| |||||||||||||||||| |
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| T |
26991389 |
tggtcaaggaagttcgattgaacttgctgctttaggtatt |
26991350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 348 - 487
Target Start/End: Original strand, 26975971 - 26976110
Alignment:
| Q |
348 |
gtatatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttat |
447 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| | |||||| | ||| |||||| |||||||||||||||||||| | || ||||| |||||| | |
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| T |
26975971 |
gtatatggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgataccgctgttgt |
26976070 |
T |
|
| Q |
448 |
tggtcagggaagttcaattgagcttgctgctttaggtatt |
487 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
26976071 |
tggtcaaggaagttcaattgaacttgctgctttaggtatt |
26976110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 348 - 487
Target Start/End: Complemental strand, 27005935 - 27005796
Alignment:
| Q |
348 |
gtatatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttat |
447 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| | |||||| | ||| |||||| |||||||||||||||||||| | || ||||| |||||| | |
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| T |
27005935 |
gtatatggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgatacagctgttgt |
27005836 |
T |
|
| Q |
448 |
tggtcagggaagttcaattgagcttgctgctttaggtatt |
487 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |
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| T |
27005835 |
tggtcaaggaagttcaattgaacttgctgctttaggtatt |
27005796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 623 - 720
Target Start/End: Complemental strand, 26953945 - 26953848
Alignment:
| Q |
623 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
720 |
Q |
| |
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||||||||| || ||||||||||||||||||| || ||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||||| |
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| T |
26953945 |
aggtcctgccacggttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacagg |
26953848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 623 - 720
Target Start/End: Complemental strand, 26991275 - 26991178
Alignment:
| Q |
623 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
720 |
Q |
| |
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|||||||||||||||| |||||||||| || |||| || |||||||| || |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
26991275 |
aggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacagg |
26991178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 26954325 - 26954273
Alignment:
| Q |
434 |
gatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtat |
486 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26954325 |
gatactgctgttgttggtcagggaagttcaaccgagcttgctgctttaggtat |
26954273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 720
Target Start/End: Original strand, 26976184 - 26976281
Alignment:
| Q |
623 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
720 |
Q |
| |
|
|||||||||||||||| |||| ||||| || |||| | || |||||| | || |||||||||| ||||||||||||||||| || |||||||||| |
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| T |
26976184 |
aggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgctaaacagg |
26976281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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