View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_10 (Length: 355)
Name: NF10448_10
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 28596533 - 28596179
Alignment:
| Q |
1 |
atgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaattaatttaatgatgaaagagactaacaga |
100 |
Q |
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| T |
28596533 |
atgaattgataataaatctttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaattaatttaatgatgaaagagactaacaga |
28596434 |
T |
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| Q |
101 |
caccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattccagc |
200 |
Q |
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| T |
28596433 |
caccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttatgattccagc |
28596334 |
T |
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| Q |
201 |
agatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28596333 |
agatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggatttttgctgtattcagaaacgatagaa |
28596234 |
T |
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| Q |
301 |
tctgtagatcctcctccaccgaataaaacttgatctgattgaagaagacccttct |
355 |
Q |
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| T |
28596233 |
tctgtagatcctcctccaccgaataaaacttgatctgattgaagaagacccttct |
28596179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32494756 - 32494399
Alignment:
| Q |
1 |
atgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaatt---aatttaatgatgaaagagactaac |
97 |
Q |
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| T |
32494756 |
atgaattgatagtaaataattctataaacaccgtacaattgtagaaacaggaacgaaaatgtattaaagaatttgcaatttaatgatgaaagagactaca |
32494657 |
T |
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| Q |
98 |
agacaccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattcc |
197 |
Q |
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| T |
32494656 |
tggcaccatcaatagcaattggcaaacgaatgatgcattctgatgaagaaaaaaatttgcaaaatcaattgatagcactgcatatacttcttatgattcc |
32494557 |
T |
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| Q |
198 |
agcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgata |
297 |
Q |
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| T |
32494556 |
agcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaagtagtaggatttttgctgtattcagaaacgata |
32494457 |
T |
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| Q |
298 |
gaatctgtagatcctcctccaccgaataaaacttgatctgattgaagaagacccttct |
355 |
Q |
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| T |
32494456 |
gaatctgtagatcctcctccaccaaataaaacttgatctgattgaagaagacccttct |
32494399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 28591603 - 28591795
Alignment:
| Q |
161 |
attaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagactt |
260 |
Q |
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|||| |||| ||||||||| || |||||||| || ||||| || || || ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28591603 |
attagttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagactt |
28591702 |
T |
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| Q |
261 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagatcctcctccaccgaat-aaaacttgatctgattgaagaagacccttct |
355 |
Q |
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| T |
28591703 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgtaga---tcctccactgaataaaaacttgatctgattgaagaagacccttct |
28591795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 355
Target Start/End: Original strand, 28586508 - 28586707
Alignment:
| Q |
154 |
ttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagt |
253 |
Q |
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||||| ||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
28586508 |
ttgtataattagttgactgcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagttgcaaagt |
28586607 |
T |
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| Q |
254 |
cagacttaaaagttgtaggattgttgctgtattcagaaac-gatagaatctgtagatcctcctccaccgaataaaacttgatctgattgaagaagaccct |
352 |
Q |
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| T |
28586608 |
cggatttgaaagttgtaggattgttgctgtattctgaaacaaaaagaatttgtaga---ccctccactgaataaaacttgatctgattgaagaagaccct |
28586704 |
T |
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