View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10448_11 (Length: 326)

Name: NF10448_11
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10448_11
NF10448_11
[»] chr5 (32 HSPs)
chr5 (15-326)||(38816628-38816932)
chr5 (116-191)||(19820428-19820503)
chr5 (36-165)||(22423764-22423895)
chr5 (124-191)||(22013364-22013431)
chr5 (117-191)||(42469171-42469245)
chr5 (68-152)||(3966492-3966577)
chr5 (116-159)||(27144445-27144488)
chr5 (119-152)||(6035472-6035505)
chr5 (34-83)||(8420075-8420124)
chr5 (117-166)||(15410483-15410532)
chr5 (118-191)||(30135264-30135336)
chr5 (124-191)||(2436878-2436939)
chr5 (117-169)||(6326332-6326384)
chr5 (36-88)||(9929668-9929720)
chr5 (116-152)||(17123037-17123073)
chr5 (68-176)||(41995436-41995543)
chr5 (68-152)||(11685928-11686012)
chr5 (118-176)||(15382442-15382500)
chr5 (123-169)||(16304465-16304511)
chr5 (34-64)||(24906250-24906280)
chr5 (117-147)||(27932229-27932259)
chr5 (116-150)||(28588708-28588742)
chr5 (116-169)||(21191090-21191143)
chr5 (116-189)||(26716097-26716169)
chr5 (116-189)||(26985837-26985909)
chr5 (114-143)||(32766975-32767004)
chr5 (123-168)||(41633708-41633753)
chr5 (116-152)||(14674258-14674294)
chr5 (116-152)||(19579690-19579726)
chr5 (125-169)||(21522722-21522766)
chr5 (125-169)||(21533288-21533332)
chr5 (116-152)||(31084312-31084348)
[»] chr2 (29 HSPs)
chr2 (80-191)||(21782817-21782927)
chr2 (85-176)||(4332891-4332981)
chr2 (127-191)||(33519736-33519800)
chr2 (116-191)||(20539708-20539783)
chr2 (91-176)||(18276486-18276570)
chr2 (125-190)||(21624217-21624282)
chr2 (85-143)||(1327976-1328033)
chr2 (116-166)||(21616737-21616787)
chr2 (66-176)||(18420417-18420528)
chr2 (118-191)||(19536434-19536507)
chr2 (119-192)||(23717976-23718048)
chr2 (119-192)||(24105648-24105720)
chr2 (117-165)||(10535794-10535842)
chr2 (36-149)||(19573970-19574078)
chr2 (68-141)||(44860320-44860394)
chr2 (36-83)||(19536361-19536408)
chr2 (116-159)||(31727839-31727882)
chr2 (116-151)||(37411278-37411313)
chr2 (116-190)||(38117193-38117261)
chr2 (37-83)||(18255945-18255991)
chr2 (37-83)||(34691770-34691816)
chr2 (37-83)||(34714182-34714228)
chr2 (68-166)||(36409614-36409711)
chr2 (117-186)||(41942060-41942129)
chr2 (116-152)||(896200-896236)
chr2 (116-152)||(31018579-31018615)
chr2 (116-148)||(31284041-31284073)
chr2 (36-72)||(42511322-42511358)
chr2 (117-149)||(42832311-42832343)
[»] chr7 (34 HSPs)
chr7 (117-191)||(27944991-27945065)
chr7 (66-148)||(29787354-29787435)
chr7 (36-196)||(7328639-7328805)
chr7 (116-167)||(2425767-2425818)
chr7 (68-152)||(32308109-32308194)
chr7 (85-148)||(19206043-19206107)
chr7 (117-191)||(24105629-24105702)
chr7 (36-146)||(11700798-11700909)
chr7 (116-169)||(11722132-11722185)
chr7 (85-159)||(22484007-22484082)
chr7 (68-178)||(24339605-24339716)
chr7 (73-176)||(30731002-30731104)
chr7 (117-167)||(5235960-5236010)
chr7 (118-176)||(26329418-26329476)
chr7 (76-149)||(11072290-11072362)
chr7 (116-176)||(1433419-1433479)
chr7 (116-156)||(2948668-2948708)
chr7 (116-152)||(20549780-20549816)
chr7 (116-152)||(23191885-23191921)
chr7 (119-159)||(25791635-25791675)
chr7 (120-191)||(2034392-2034462)
chr7 (68-152)||(6630897-6630982)
chr7 (116-155)||(8046061-8046100)
chr7 (68-168)||(15902795-15902896)
chr7 (117-148)||(28155563-28155594)
chr7 (116-191)||(43027503-43027578)
chr7 (117-176)||(43249958-43250017)
chr7 (68-134)||(9933282-9933347)
chr7 (116-166)||(26733279-26733329)
chr7 (35-64)||(17852091-17852120)
chr7 (118-151)||(49107811-49107844)
chr7 (36-64)||(15680900-15680928)
chr7 (116-152)||(21828439-21828475)
chr7 (116-152)||(22868031-22868067)
[»] chr6 (46 HSPs)
chr6 (68-169)||(10294079-10294181)
chr6 (116-176)||(9027143-9027203)
chr6 (36-166)||(8805524-8805656)
chr6 (116-191)||(853893-853968)
chr6 (68-176)||(16766662-16766771)
chr6 (116-191)||(30866178-30866253)
chr6 (116-154)||(19040339-19040377)
chr6 (116-176)||(5000660-5000720)
chr6 (36-152)||(5732474-5732580)
chr6 (123-191)||(8365560-8365628)
chr6 (117-189)||(12696277-12696348)
chr6 (68-176)||(9107355-9107464)
chr6 (116-167)||(9629357-9629408)
chr6 (117-191)||(6389693-6389767)
chr6 (116-166)||(9658854-9658904)
chr6 (116-150)||(20371144-20371178)
chr6 (117-191)||(25038106-25038180)
chr6 (123-191)||(3398569-3398637)
chr6 (116-152)||(7265627-7265663)
chr6 (116-176)||(7938081-7938141)
chr6 (117-165)||(13851712-13851760)
chr6 (116-168)||(16833281-16833333)
chr6 (36-83)||(426478-426525)
chr6 (116-159)||(677819-677862)
chr6 (117-176)||(7977865-7977924)
chr6 (117-191)||(10649278-10649352)
chr6 (117-191)||(20518295-20518369)
chr6 (34-64)||(34073276-34073306)
chr6 (73-176)||(34073337-34073441)
chr6 (116-169)||(426548-426601)
chr6 (36-77)||(2117134-2117175)
chr6 (116-149)||(10842524-10842557)
chr6 (116-152)||(7996412-7996448)
chr6 (116-152)||(8022353-8022389)
chr6 (116-168)||(8777007-8777059)
chr6 (116-152)||(10339160-10339196)
chr6 (116-191)||(12868709-12868784)
chr6 (116-152)||(17341698-17341734)
chr6 (116-152)||(17841623-17841659)
chr6 (120-168)||(18803549-18803597)
chr6 (117-149)||(21395342-21395374)
chr6 (116-152)||(21424836-21424872)
chr6 (72-149)||(26562681-26562759)
chr6 (116-168)||(34172167-34172218)
chr6 (68-152)||(34290064-34290147)
chr6 (116-176)||(34595099-34595159)
[»] chr8 (19 HSPs)
chr8 (68-169)||(22651948-22652050)
chr8 (68-174)||(29510289-29510396)
chr8 (123-191)||(25192388-25192456)
chr8 (116-178)||(24362236-24362298)
chr8 (116-191)||(4298920-4298994)
chr8 (116-182)||(926822-926888)
chr8 (116-178)||(4673459-4673521)
chr8 (116-169)||(27213519-27213572)
chr8 (116-149)||(39954313-39954346)
chr8 (123-191)||(126390-126457)
chr8 (116-152)||(31109552-31109588)
chr8 (116-191)||(13436998-13437073)
chr8 (117-168)||(24669406-24669457)
chr8 (116-155)||(31236611-31236650)
chr8 (116-150)||(27101506-27101540)
chr8 (116-149)||(13844630-13844663)
chr8 (123-176)||(22197783-22197836)
chr8 (116-149)||(34897077-34897110)
chr8 (83-152)||(37283812-37283880)
[»] chr3 (36 HSPs)
chr3 (79-178)||(5441029-5441128)
chr3 (66-157)||(8039818-8039910)
chr3 (116-191)||(8383207-8383282)
chr3 (68-191)||(25064859-25064981)
chr3 (117-176)||(24205076-24205135)
chr3 (125-191)||(8842280-8842346)
chr3 (118-192)||(14223889-14223962)
chr3 (95-160)||(5407261-5407325)
chr3 (68-174)||(14829657-14829763)
chr3 (116-168)||(26508083-26508135)
chr3 (116-176)||(28917966-28918026)
chr3 (117-176)||(4991002-4991061)
chr3 (117-152)||(9800029-9800064)
chr3 (123-182)||(10335327-10335386)
chr3 (116-159)||(11610503-11610546)
chr3 (118-192)||(14747510-14747584)
chr3 (116-191)||(55401025-55401100)
chr3 (34-72)||(4466538-4466576)
chr3 (34-64)||(5440965-5440995)
chr3 (116-190)||(8587055-8587129)
chr3 (114-168)||(11658788-11658842)
chr3 (34-72)||(13807237-13807275)
chr3 (116-190)||(32429414-32429488)
chr3 (95-169)||(34307794-34307867)
chr3 (123-176)||(41961691-41961744)
chr3 (116-152)||(2620087-2620123)
chr3 (116-152)||(4987325-4987361)
chr3 (116-152)||(6525714-6525750)
chr3 (116-176)||(15796328-15796388)
chr3 (116-152)||(21479107-21479143)
chr3 (120-152)||(21720753-21720785)
chr3 (117-149)||(25074781-25074813)
chr3 (116-152)||(26290360-26290396)
chr3 (116-168)||(26492239-26492291)
chr3 (36-72)||(27505334-27505370)
chr3 (116-152)||(40052321-40052357)
[»] scaffold0306 (1 HSPs)
scaffold0306 (116-192)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (36-191)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (116-192)||(21902-21978)
[»] chr1 (36 HSPs)
chr1 (116-168)||(6427323-6427375)
chr1 (116-176)||(40917716-40917776)
chr1 (116-175)||(398799-398858)
chr1 (116-168)||(36878433-36878486)
chr1 (36-89)||(48547938-48547991)
chr1 (116-152)||(2896155-2896191)
chr1 (37-183)||(10572535-10572690)
chr1 (116-152)||(17831565-17831601)
chr1 (117-192)||(5376535-5376609)
chr1 (116-191)||(5927374-5927449)
chr1 (34-137)||(44482234-44482343)
chr1 (117-166)||(41877505-41877554)
chr1 (116-160)||(12443494-12443538)
chr1 (116-152)||(19562655-19562691)
chr1 (117-152)||(609493-609528)
chr1 (77-169)||(1486703-1486796)
chr1 (76-148)||(38503313-38503386)
chr1 (123-178)||(48040503-48040558)
chr1 (91-149)||(1262876-1262933)
chr1 (118-152)||(3490426-3490460)
chr1 (118-168)||(5944254-5944304)
chr1 (116-174)||(7918245-7918303)
chr1 (116-166)||(9709795-9709845)
chr1 (116-150)||(10475011-10475045)
chr1 (116-166)||(34298411-34298461)
chr1 (117-191)||(39130802-39130876)
chr1 (114-152)||(40285686-40285724)
chr1 (123-168)||(14359562-14359607)
chr1 (116-185)||(19324518-19324587)
chr1 (116-149)||(21530681-21530714)
chr1 (68-146)||(25361881-25361960)
chr1 (116-168)||(5898300-5898352)
chr1 (116-152)||(6415035-6415071)
chr1 (68-149)||(9828036-9828118)
chr1 (85-149)||(25452152-25452215)
chr1 (116-152)||(46348417-46348453)
[»] scaffold0168 (3 HSPs)
scaffold0168 (36-182)||(21002-21149)
scaffold0168 (36-97)||(21217-21278)
scaffold0168 (36-97)||(21346-21407)
[»] chr4 (15 HSPs)
chr4 (117-174)||(847918-847975)
chr4 (117-152)||(35723420-35723455)
chr4 (118-152)||(17345451-17345485)
chr4 (118-187)||(28084475-28084544)
chr4 (116-176)||(23293020-23293080)
chr4 (117-176)||(21945468-21945527)
chr4 (85-159)||(2234232-2234305)
chr4 (68-139)||(30982863-30982935)
chr4 (116-150)||(40613441-40613475)
chr4 (116-169)||(36635296-36635349)
chr4 (116-148)||(1747205-1747237)
chr4 (114-194)||(3947798-3947877)
chr4 (117-149)||(7012058-7012090)
chr4 (36-80)||(18844423-18844467)
chr4 (36-72)||(28470448-28470484)
[»] scaffold0279 (1 HSPs)
scaffold0279 (115-191)||(17903-17979)
[»] scaffold0053 (1 HSPs)
scaffold0053 (116-176)||(8763-8823)
[»] scaffold0044 (1 HSPs)
scaffold0044 (66-151)||(53170-53256)
[»] scaffold0007 (1 HSPs)
scaffold0007 (117-176)||(225303-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (117-152)||(92796-92831)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-176)||(241559-241668)
[»] scaffold0018 (2 HSPs)
scaffold0018 (116-188)||(178853-178925)
scaffold0018 (117-152)||(192284-192319)
[»] scaffold0171 (1 HSPs)
scaffold0171 (128-191)||(23371-23433)
[»] scaffold0022 (1 HSPs)
scaffold0022 (116-191)||(90793-90868)
[»] scaffold0020 (1 HSPs)
scaffold0020 (116-191)||(135346-135421)
[»] scaffold0697 (1 HSPs)
scaffold0697 (116-149)||(1636-1669)
[»] scaffold0652 (1 HSPs)
scaffold0652 (116-176)||(496-556)
[»] scaffold0450 (1 HSPs)
scaffold0450 (36-64)||(8564-8592)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-148)||(28843-28913)
[»] scaffold0103 (1 HSPs)
scaffold0103 (116-152)||(51800-51836)
[»] scaffold0027 (1 HSPs)
scaffold0027 (34-82)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 38816628 - 38816932
Alignment:
Q  15 tatcacgattcacgaatataactatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatag 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38816628 tatcacgattcacgaatataactatgaatcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattatactgaaatatag 38816727  T
Q  115 cgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccgttcaattatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||| ||||||||||||||||||||||||||||||||||    
T  38816728 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaattatt 38816820  T
Q  215 ctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 314  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816821 ctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 38816920  T
Q  315 gactctctgttg 326  Q
    ||||||||||||    
T  38816921 gactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 19820428 - 19820503
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||||||||||| |||||||| || ||| ||||||||| |||||||| ||||||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 22423764 - 22423895
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||| |||  |||||| |||| ||| | |||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaattatt 22423862  T
Q  133 agcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||  ||||| | ||||||||||| ||| |||||    
T  22423863 agtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  124 caaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||| |||||||||||||||| || ||| ||||||||| |||||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 42469245 - 42469171
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| | |||||||||||||| |||| ||| ||||| ||| |||||| | ||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 3966577 - 3966492
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||| ||||| |||||||||||||  |||| | |||| | | | ||||||||||||||||||||||||||||| |||||||    
T  3966577 tgtccgacactgacacgacaccgacacatataattacactgaattgt-gtgattttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 27144488 - 27144445
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtg 27144445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    ||||||| |||||||||||||||||||||||||||| || ||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 30135336 - 30135264
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||| ||||||||||||  ||||||||||||| ||||||||| ||||||| | ||||||||  |||||||||||    
T  30135336 ttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtcc-gtgtccgtatatgtgcttcatag 30135264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 2436939 - 2436878
Alignment:
Q  124 caaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||||||||||      ||| ||||||||| |||||||| ||||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttcatag 2436878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||||||||||| ||||| ||||||||||||||| || ||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 88  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 41995543 - 41995436
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtcc 167  Q
    ||||||||||||| ||  ||||||||| |||||| | |||| ||| | |||||| || |||||||||  |||||||||||||||| |||||| ||| |||    
T  41995543 tgtccgacaccgatacggcaccgacacttaattacattgaattat-gtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgtatcc 41995445  T
Q  168 ggagtccgt 176  Q
     | ||||||    
T  41995444 agtgtccgt 41995436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 11686012 - 11685928
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||| || |||||||||||||  |||| | | || ||| |||| |||||||||||||||||||||||||| |||||||    
T  11686012 tgtccgacaccga-acgacaccgacacatataattacactaaattat-gcgactttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 15382500 - 15382442
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||| ||||||||||||| |||||||||||||| | || ||| ||||||||| ||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 16304465 - 16304511
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||| || |||||||||||||||||||||||| || |||||||||    
T  16304465 tcaaataatcagcggtgtcggcgtgtcagtatctatgtcgtgtccgg 16304511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28588708 - 28588742
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||||||||||||||| ||||||||||||||||    
T  28588708 gattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||| ||||||||||||| |||||||| ||||||| || ||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 26716169 - 26716097
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcat 189  Q
    |||||||||||||||||||| |||||||| ||||| | ||| || ||||||| | ||||||||  |||||||||    
T  26716169 gattttctcaaattattagcagtgtcggcatgtcaatgtctatgtcgtgtcc-gtgtccgtatcggtgcttcat 26716097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 26985909 - 26985837
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcat 189  Q
    |||||||||||||||||||| |||||||| ||||| | ||| || ||||||| | ||||||||  |||||||||    
T  26985909 gattttctcaaattattagcagtgtcggcatgtcaatgtctatgtcgtgtcc-gtgtccgtatcggtgcttcat 26985837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 41633753 - 41633708
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||||    
T  41633753 tcaaattattagctgtgtcggagtgtcagtatctgtgtggtgtccg 41633708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 14674294 - 14674258
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  14674294 gattttttcaaattattagctgtgtcggcgtgtcagt 14674258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 19579726 - 19579690
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| |||||||||| |||||    
T  19579726 gattttctcaaattattagctgtgtcggcgtatcagt 19579690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    ||||||||||| |||||||||||||||| || ||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    ||||||||||| |||||||||||||||| || ||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 31084348 - 31084312
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31084348 gattttttcaaattattagctgtgtcggcgtgtcagt 31084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 21782817 - 21782927
Alignment:
Q  80 acaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtatt 179  Q
    |||| |||||| |||||||||| | |||| ||| | |||||||||||||||||||| |||||||||||||||| | |||| ||||||| | ||| |||||    
T  21782817 acacgacaccggcacataattacactgaattat-gtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtatt 21782915  T
Q  180 cgtgcttcatag 191  Q
    ||||||||||||    
T  21782916 cgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 4332981 - 4332891
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||| ||| | ||||||| |||||||||| | |||||||| ||| |||||||||||||||||||| ||||||    
T  4332981 acaccgacacataattacattgaattat-gtgattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  127 attattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| ||||||||||| | | ||||||||| |||||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 20539708 - 20539783
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| |||||| ||||||||| || ||| ||||||| | |||||||| ||||||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 18276570 - 18276486
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||| | |||| || || ||||||||||||||||||||||||||||| | ||||| |||||  ||||||||| ||||||    
T  18276570 acacataattacactgaatta-agtgattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    ||||||||||| |||||||||||||||| |||||| ||||| ||| |||||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 1328033 - 1327976
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||    
T  1328033 acaccgacacataattatactgaattttat-gattttctcaaattattagcggtgtcgg 1327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    |||||||||||||||||||||||||||||||||| || || ||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 18420417 - 18420528
Alignment:
Q  66 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgt 163  Q
    |||||||||||  ||||| ||||||||||  ||||||  | |||| ||| | |||||||||||||||||||| |||| ||||||||||||| |||  |||    
T  18420417 catgtccgacatggacacaacaccgacacttataattgcattgaattat-gtgattttctcaaattattagcagtgttggcgtgtcagtatatgtctcgt 18420515  T
Q  164 gtccggagtccgt 176  Q
    || ||| ||||||    
T  18420516 gttcggtgtccgt 18420528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 19536434 - 19536507
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||| ||||||||||||  |||||||||||||| | || ||| ||||||||| ||||||||  |||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 23718048 - 23717976
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||||||||||||||||||||| |||||||| || ||| | ||||| | ||| |||| |||||||||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 23717976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 24105720 - 24105648
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||||||||||||||||||||| |||||||| || ||| | ||||| | ||| |||| |||||||||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 24105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 10535794 - 10535842
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  10535794 attttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 19574078 - 19573970
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 135  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||  ||||     ||||||| | |||| ||| |  ||||||| ||||||||| |    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacacgccacc----tataattacactgaattat-gttattttcttaaattattatc 19573984  T
Q  136 ggtgtcggcgtgtc 149  Q
    ||||||||||||||    
T  19573983 ggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 44860394 - 44860320
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtc 141  Q
    ||||| ||||| |||| |||||||||||||  |||| | |||| ||| ||||||||||||||||||||||||||||    
T  44860394 tgtccaacaccaacacgacaccgacacatataattacactgaattat-gcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 31727882 - 31727839
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  31727882 gattttctcaaattattagtagtgtcagcgtgtcagtatctgtg 31727839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 37411278 - 37411313
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcag 151  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37411278 gattttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 38117193 - 38117261
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    |||||| ||||||||||||| ||||||||||||||      ||| ||||||||| |||||||| |||||||||||    
T  38117193 gattttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttcata 38117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 36409614 - 36409711
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    |||| |||||| |||  ||||||||||||||||| | | || ||| | |||||| ||||||||| |||||||||||| ||| |||||| ||| ||||||    
T  36409614 tgtcagacaccaacatgacaccgacacataattacactaaattat-gtgattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 41942129 - 41942060
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgctt 186  Q
    ||||||||||||| ||| ||||| | |||||||||| |||||| ||| || || |||||||| |||||||    
T  41942129 attttctcaaatttttaacggtgactgcgtgtcagtgtctgtgtcgtatcaggcgtccgtatccgtgctt 41942060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 896236 - 896200
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  896236 gattttctcaaactattagcagtgtcggcgtgtcagt 896200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 31018615 - 31018579
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||| |||||||||||||||| |||||||||||    
T  31018615 gattttctgaaattattagcggtgttggcgtgtcagt 31018579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 31284073 - 31284041
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgt 148  Q
    |||||||||||||||||||| ||||||||||||    
T  31284073 gattttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 42832311 - 42832343
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||||||||||||| |||||    
T  42832311 attttctcaaattattagcggtgtcggtgtgtc 42832343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 27945065 - 27944991
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||| ||||||||||||||||| || ||| ||||||||| |||||||| ||||||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 29787354 - 29787435
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||| |||||||||  ||||| ||||||||||| | |||| ||| | |||||||||||||||||||||||||||||||||    
T  29787354 catgtccaacaccgacattacaccaacacataattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 7328639 - 7328805
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacacc-----gacaccacaccgacacata--attataatgaaatatagcgattttctcaaat 128  Q
    |||||||||||| |||||| ||| ||||| | |||||||||||     ||||| |||||||||||||  |||| | | || ||| |  ||||||||||||    
T  7328639 ctatgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacacgacaccgacacatataattacactaaattat-gttattttctcaaat 7328737  T
Q  129 tattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagtatat 196  Q
    ||||||| || ||| ||||| | | |||||| ||||| ||| |||||||| |||||||||||||||||    
T  7328738 tattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtcc 167  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 32308194 - 32308109
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||| |||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||||||||||||||||||||||||    
T  32308194 tgtccaacaccgacacgacactgacacatacaattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 19206107 - 19206043
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    |||||||||||||  ||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  19206107 acaccgacacatataattataatgaattat-gtgattttctcaaattattagcggtgtcggcgtgt 19206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 24105702 - 24105629
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||| ||||||||||||| |||||||||||||||| || ||| |||||||| | ||||||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 11700909 - 11700798
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatta 133  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| |||||||||||| | |||| ||| | |||||| |||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataattacattgaattat-gtgattttgtcaaattatta 11700811  T
Q  134 gcggtgtcggcgt 146  Q
     ||||||| ||||    
T  11700810 acggtgtcagcgt 11700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||||||||||| |||||||||||||||||||||| || ||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 22484082 - 22484007
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||||||||||||  |||||| |||| ||| || ||||||| |||||||||||||||||||||||||||| ||||||    
T  22484082 acaccgacacatataattatactgaattat-gcaattttctaaaattattagcggtgtcggcgtgtcagtgtctgtg 22484007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 24339716 - 24339605
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||| | ||  || |||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgt 24339618  T
Q  166 ccggagtccgtat 178  Q
    |||| ||||||||    
T  24339617 ccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 30731104 - 30731002
Alignment:
Q  73 gacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagt 172  Q
    |||||| |||| ||||||||||| ||||| | |||| ||| | ||||||||||||||||| |||||||||||||| || | | |||| |||||| || ||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattat-gtgattttctcaaattattcgcggtgtcggcgtgccactgtatgtgtcgtgtctggtgt 30731006  T
Q  173 ccgt 176  Q
    ||||    
T  30731005 ccgt 30731002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 5236010 - 5235960
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtcc 167  Q
    ||||||| |||||||||||||||||| ||||||||| |||||| |||||||    
T  5236010 attttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 26329418 - 26329476
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||| || ||||||||||||||| |||||| ||||||| | ||||||    
T  26329418 ttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 11072362 - 11072290
Alignment:
Q  76 accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||| ||||||||||||||||||| |||| ||||    |||| ||||||||||| |||||||||||||||    
T  11072362 accgacacgacaccgacacataattatattgaattata-tatttttttcaaattattatcggtgtcggcgtgtc 11072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1433479 - 1433419
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||||| |||||||||||||||| | || ||| ||||| ||| ||||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 2948708 - 2948668
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatct 156  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  2948708 gattttctaaaattatcagcggtgtcggcgtgtcagtatct 2948668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 23191921 - 23191885
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23191921 gattttctcaaattattagcggtgtcggcgtatcagt 23191885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 25791675 - 25791635
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagtgtctgtg 25791635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||| ||||||| ||||| |||||| ||| |||||| | | ||||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 6630897 - 6630982
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||| |||| ||| |||||||||  |||| | |||| || || || |||||||||||||||| |||||||||||||||||    
T  6630897 tgtccgacaccaacacgacatcgacacatataattacactgaatta-agtgactttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 8046061 - 8046100
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatc 155  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatc 8046100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 15902896 - 15902795
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||||||| |||||||| |||||||||||||  |||| | | || ||| | |||||| |||||||||||  ||||||||| ||||||| |||||| |||||    
T  15902896 tgtccgataccgacacaacaccgacacatataattacactaaattat-gtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgtcgtgt 15902798  T
Q  166 ccg 168  Q
    |||    
T  15902797 ccg 15902795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 28155594 - 28155563
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 43027503 - 43027578
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| | |||| ||||||||| || ||| ||||||| | ||||| || ||||||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 43250017 - 43249958
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| || ||| | ||||||| ||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 9933347 - 9933282
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattag 134  Q
    |||||||||||||||| |||| ||||||||| | || |||||||| | |||||| ||||||||||||    
T  9933347 tgtccgacaccgacacgacactgacacataagtttactgaaatat-gtgattttttcaaattattag 9933282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    |||||| |||||||||||||||||||| ||||||||| || ||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  35 actatgaagcacggacactcctcgaattag 64  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 49107844 - 49107811
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcag 151  Q
    |||||||||||||||||||||||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcag 49107811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 21828439 - 21828475
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||| || ||||||||||||||||||    
T  21828439 gattttctcaaattactaacggtgtcggcgtgtcagt 21828475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 22868067 - 22868031
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||| |||||||| |||||||||||||||||    
T  22868067 gattttctcatattattagtggtgtcggcgtgtcagt 22868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 46)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 10294181 - 10294079
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||||||||||| |||| |||||||||||||  |||| | |||||||| |||||| |||||||||||||||||| ||||| |||||||||| ||| |||||    
T  10294181 tgtccgacaccaacacgacaccgacacatataattacattgaaatat-gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgt 10294083  T
Q  166 ccgg 169  Q
    ||||    
T  10294082 ccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 8805524 - 8805656
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgaca---ccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| ||||||| ||    | ||||| ||||||||||||||||| | | || ||| | |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacacataattacactaaattat-gtgattttctcaaattatt 8805622  T
Q  133 agcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    ||| ||| || |||||| || |||||| ||||||    
T  8805623 agcagtgccgacgtgtcggtgtctgtgtcgtgtc 8805656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 853893 - 853968
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||  ||||||||||||||| ||| ||| ||||||||| |||||||| |||| |||||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 16766771 - 16766662
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||||| ||  || |||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgt 16766673  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  16766672 ccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 30866178 - 30866253
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||||||||||| || ||||| || || ||| | ||||||| |||||||||||| ||||||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtat 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 5000660 - 5000720
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||| ||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 5732474 - 5732580
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 135  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||         | ||||||| | | |||||| | |||||||||||||||||| |    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac---------atataattacactaaaatat-gtgattttctcaaattattaac 5732563  T
Q  136 ggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||    
T  5732564 ggtgtcggcgtgtcagt 5732580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||  |||||||||||||||| || ||| |||||| || |||||||| ||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 12696348 - 12696277
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcat 189  Q
    ||||| ||||||||||||| |||||||||||||||| || ||| ||||||| | |||||||| ||||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 9107355 - 9107464
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| | | | |||||| ||||||||||||| |||||||||||| ||| || ||| |||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  9107454 ccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtcc 167  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 6389767 - 6389693
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| | |||||||||||| ||| || ||| ||||||||| ||| || | ||||||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    |||||||| |||||||||||||||||||||||||||| || ||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 20371144 - 20371178
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||||||||||||||||||||||||||||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtgtca 20371178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 25038106 - 25038180
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| |||||||  |||||||||||||||| ||| | |   |||||||| ||||||||||||    
T  25038106 attttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgtattcaatgtccgtatccgtgcttcatag 25038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||| |||||||||||||||| || ||| ||||| ||  |||||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 7265627 - 7265663
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||| |||||||||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagt 7265663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 7938141 - 7938081
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||||| ||  || ||||||||| ||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||||||||||||| ||||||||| || ||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 16833333 - 16833281
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  16833333 gattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 677862 - 677819
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||||||||||||||||| | |||||||||||||||| ||||||    
T  677862 gattttctcaaattattaacagtgtcggcgtgtcagtgtctgtg 677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 7977865 - 7977924
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||| ||||||||||||| |||||||||||||||||||  || ||||||| | ||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 10649352 - 10649278
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||| |||||||| || |||||||||||| ||| | | |||| ||| ||||| |||||||| ||||||||||||    
T  10649352 attttatcaaattactaacggtgtcggcgtatcattgtttgtgtcgtatccggtgtccgtatccgtgcttcatag 10649278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 20518369 - 20518295
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||| |||| |||||  | |||||||| |||||| ||| |||||  ||||||| ||||||||||||    
T  20518369 attttctcaaattgttagtggtgttagtgtgtcagtgtctgtgtcgtatccggcatccgtatccgtgcttcatag 20518295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 34073337 - 34073441
Alignment:
Q  73 gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgga 170  Q
    ||||||||||| |||||||| ||||  |||| | |||| ||| | ||||||||||||||||||||| ||| ||| ||||||| || ||| ||||||| |     
T  34073337 gacaccgacacgacaccgacccatataattacactgaattat-gagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagt 34073435  T
Q  171 gtccgt 176  Q
    ||||||    
T  34073436 gtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacac 77  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 10842557 - 10842524
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||| |||||||||||||||||||||||||||    
T  10842557 gattttttcaaattattagcggtgtcggcgtgtc 10842524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 7996412 - 7996448
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| |||||||| |||||||    
T  7996412 gattttctcaaattattagcagtgtcggcatgtcagt 7996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 8022389 - 8022353
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8022389 gattttctcaaattattagcagtgtcggcatgtcagt 8022353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||| ||||||||||||  |||||||||||||||| || ||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 10339160 - 10339196
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||| | |||||||||||||||||||    
T  10339160 gattttctcaaattaatcgcggtgtcggcgtgtcagt 10339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 12868709 - 12868784
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatc-tgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| | |||||| |||||||||| | ||||||||||    
T  12868709 gattttttcaaattattaactgtgtcggcgtgtcagtgtcgtgtccggtgtcc-gagtccgtatccctgcttcatag 12868784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17341698 - 17341734
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  17341698 gattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17841623 - 17841659
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  17841623 gattttttcaaattattagctgtgtcggcgtgtcagt 17841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 18803549 - 18803597
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    ||||| ||||||||||||||||||| ||||||| | |||| ||||||||    
T  18803549 ttctcgaattattagcggtgtcggcatgtcagtgtttgtgtcgtgtccg 18803597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 21395342 - 21395374
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||||||||| ||||||||    
T  21395342 attttctcaaattattagcggtgttggcgtgtc 21395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 21424836 - 21424872
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21424836 gattttttcaaattattagcggtgttggcgtgtcagt 21424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 26562759 - 26562681
Alignment:
Q  72 cgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||| ||| |||||||||  |||| | |||| ||| | |||||||||||||| ||||| |||||||||||||    
T  26562759 cgacaccgacacgacatcgacacatataattacactgaattat-gtgattttctcaaatttttagcagtgtcggcgtgtc 26562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34172218 - 34172167
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| ||||||||    
T  34172218 gattttctcaaattgttagaggtgtcggcatgtcagtat-tgtgtcgtgtccg 34172167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 34290064 - 34290147
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||| ||||| ||||| ||||||||||||||||| | |||| ||| | |||| || |||||||||||  |||||||| |||||||    
T  34290064 tgtcggacactgacacgacaccgacacataattacactgaattat-gtgattctcgcaaattattagttgtgtcggcatgtcagt 34290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 34595159 - 34595099
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||  |||||||||||||| | || ||| ||||||||| ||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 22652050 - 22651948
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| ||| | |||||| ||||||||||||| |||||||||||||||| || ||| |||||    
T  22652050 tgtccgacaccgacacgacaccgacacttgtaattatattgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  166 ccgg 169  Q
    ||||    
T  22651951 ccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 29510289 - 29510396
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| | | | |||||| ||||||||||||| |||||||||||||||| || ||| |||||    
T  29510289 tgtccgacaccgacactacaccgacacttgtaattatactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 29510387  T
Q  166 ccggagtcc 174  Q
    |||| ||||    
T  29510388 ccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||| |||||||||||||||| || ||  ||||||||  |||||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtat 178  Q
    |||| ||||||||||||||||||||||||||||| || |||||| ||| ||||| ||||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 4298920 - 4298994
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||| | |||||||||||| |||||||||| ||||||| | |||| ||| ||||||||||||    
T  4298920 gattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc-gtgtccatatccgtgcttcatag 4298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgt 182  Q
    |||||||||||||||||||  |||| ||||||||||| || ||| ||||||||| |||||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 4673459 - 4673521
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtat 178  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| ||||||||  ||||||||    
T  4673459 gattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    |||||||| ||||||||||| ||||||||||||| ||||| ||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 39954313 - 39954346
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 126390 - 126457
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||| |||||||||||||| ||  ||||||| | || ||||| ||||||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 31109552 - 31109588
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| ||||||||||||||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagt 31109588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 13436998 - 13437073
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| |||||||||||||||| ||  || | ||||||| |||| | | ||||||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 24669457 - 24669406
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||| |||||||||||| ||||||| |||||||||| |||||| ||||||||    
T  24669457 atttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccg 24669406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 31236611 - 31236650
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatc 155  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatc 31236650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 27101540 - 27101506
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||| ||||||||||||||||||||||||||||    
T  27101540 gattttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 13844630 - 13844663
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||||| |||||||||||||    
T  13844630 gattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 22197783 - 22197836
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||| |||| ||||||| ||| |||||| ||||||||| ||||||    
T  22197783 tcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgt 22197836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 34897110 - 34897077
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||||||||||||| ||||||    
T  34897110 gattttctcaaattattagcggtgtcgacgtgtc 34897077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 37283812 - 37283880
Alignment:
Q  83 ccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||| | |||| ||| | |||||||||| ||||||||||||| | || |||||||    
T  37283812 ccacaccgacacataattacactgaattat-gtgattttctcagattattagcggtgcccgcatgtcagt 37283880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 5441029 - 5441128
Alignment:
Q  79 gacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgga-gtccgta 177  Q
    ||||| ||||||||||||||||  | |||| ||| | |||||||||||||| ||||||||| |||||||||||| |||||| |||||||||| |||||||    
T  5441029 gacacaacaccgacacataattccattgaattat-gtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgta 5441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 8039818 - 8039910
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctg 157  Q
    |||||||||||||||||| |||||||||||||  |||| | |||| ||||   |||||||||||||||||||||||| ||||||||| ||||||    
T  8039818 catgtccgacaccgacacgacaccgacacatataattacactgaattatata-attttctcaaattattagcggtgttggcgtgtcaatatctg 8039910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 8383282 - 8383207
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||||||||||||||||||||| | || ||| ||||||| | |||||| | |||||| |||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 25064981 - 25064859
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtcc 167  Q
    ||||||||||| |||| | ||| ||||||||||| | | || ||| | |||||| |||||| ||||||||||||||||||||| | |||||| |||||||    
T  25064981 tgtccgacaccaacacgataccaacacataattacactaaattat-gtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtcc 25064883  T
Q  168 ggagtccgtattcgtgcttcatag 191  Q
    || ||| |||  |||| |||||||    
T  25064882 ggtgtctgtacccgtgtttcatag 25064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 24205076 - 24205135
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| || ||| ||||||||| ||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||| ||||| | || ||| ||| ||||| |||||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 14223889 - 14223962
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||||||||||||||| | ||||||||||||| || |||||| ||||||| | ||| || |||||||||||||||    
T  14223889 ttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtcc-gtgtctgtgttcgtgcttcatagt 14223962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 5407261 - 5407325
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgc 160  Q
    ||||||| |||||| ||| | |||||||||||||| ||||||||||||||||||| ||||| ||||    
T  5407261 ataattacaatgaattat-gtgattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 14829763 - 14829657
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||||| |||||||||| |||||||||| |  |||||  ||||| ||| | |||||| ||||||||||||| |||||||||||||||| |||||| | |||    
T  14829763 tgtccaacaccgacacgacaccgacacttgtaattaccatgaattat-gtgatttt-tcaaattattagctgtgtcggcgtgtcagtgtctgtgtcatgt 14829666  T
Q  166 ccggagtcc 174  Q
    |||| ||||    
T  14829665 ccggtgtcc 14829657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 26508135 - 26508083
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||  ||||||||    
T  26508135 gattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 28918026 - 28917966
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| |||||||||||||  ||||||||||||||| || ||| ||||||||| ||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 4991002 - 4991061
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||| ||| ||||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 9800064 - 9800029
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| |||||||||||||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagt 9800029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgt 182  Q
    ||||||||||||  |||||||||||||||| || ||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 11610546 - 11610503
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||||| | |||||||||||||||| ||||||||||||||||||    
T  11610546 gatttttttaaattattagcggtgttggcgtgtcagtatctgtg 11610503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 14747584 - 14747510
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatc-tgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||| ||||||||||||| |||||||||||||||| || ||| | ||||||| | ||||||| |||||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgta-tccgtatccgtgcttcatagt 14747510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 55401100 - 55401025
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||  |||||||||| ||||| || ||| ||| ||||| ||||||||  |||||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 8587055 - 8587129
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    |||||| |||||||| |||  |||||||||||||||| || ||| | ||||||| ||||||||  ||||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 11658842 - 11658788
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||||||||||||||||| || ||| || |||||||| |||||| ||||||||    
T  11658842 gcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtccg 11658788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 32429414 - 32429488
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    |||||||| |||||||||||| |||||| |||||| | |  |||  |||||||| |||||||| |||||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 34307794 - 34307867
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    ||||||| | |||||||| | |||||||||||||||||||||||||| ||||||  || |||||| | |||||||    
T  34307794 ataattacactgaaatat-gtgattttctcaaattattagcggtgtcagcgtgttcgtgtctgtgtcatgtccgg 34307867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 41961691 - 41961744
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||  ||| |||||||||||| |||||| ||||||||| ||||||    
T  41961691 tcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtgtccgt 41961744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 2620087 - 2620123
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagt 2620123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 4987325 - 4987361
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  4987325 gattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6525714 - 6525750
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6525714 gattttctcaaattattagcggtgtcgacatgtcagt 6525750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 15796328 - 15796388
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||| | |||||||||||||| | || ||| ||||||||| ||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 21479143 - 21479107
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  21479143 gattttttcaaattattagctgtgtcggcgtgtcagt 21479107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 21720785 - 21720753
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||| ||||||||||||||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagt 21720753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 25074813 - 25074781
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||| |||||||||||||||    
T  25074813 attttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 26290396 - 26290360
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26290396 gattttctcaaattattaatggtgtcggcgtgtcagt 26290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||| |||||||||||||  ||||||||||||||| || ||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 40052357 - 40052321
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  40052357 gattttttcaaattattagctgtgtcggcgtgtcagt 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 13425 - 13349
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||||||||||||||||||  |||||||||||||||| || ||| | | ||||| |||||||| |||||||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 20279 - 20122
Alignment:
Q  36 ctatgaagcacggac---actcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaatta 130  Q
    |||||||||||||||   |||||||| ||||| | |||||  ||||||||| |||| ||||| |  ||||| | |||| ||| | |||||| ||||||||    
T  20279 ctatgaagcacggactgtactcctcggattaggcgtgtcc--caccgacacgacactgacacttgtaattacactgaattat-gtgattttttcaaatta 20183  T
Q  131 ttagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||| |||||||||||||| | || ||| ||||||||| ||||||||  |||||||||||    
T  20182 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 21902 - 21978
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||||||||||||||||||  |||||||||||||||| || ||| | | ||||| |||||||| |||||||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 40917776 - 40917716
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 398799 - 398858
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccg 175  Q
    |||||| |||||||||||||||||||||||||||||| || ||| ||||||||| |||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 36878486 - 36878433
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtg-ccgtgtccg 168  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtgtccg 36878433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 89  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 2896155 - 2896191
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagt 2896191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 10572535 - 10572690
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtcc--------gacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaa 126  Q
    |||||||||||||||||||| ||||||| | |||||        |||||| |||| ||||||||||||  ||||| |  ||| ||| | |||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacaccaacacaacaccgacacatttaattacaccgaattat-gtgattttctcaa 10572633  T
Q  127 attattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtg 183  Q
    |||||||| ||||||||||||||||| |   || ||||||||| |||||||| ||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 5376535 - 5376609
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||| |||||||||||||||||||||||| ||| || ||| |||||||||| || |||| ||||| |||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 5927374 - 5927449
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| ||||  |||||||||| || ||| ||||||||| |||||||| ||||||| ||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 44482343 - 44482234
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagc-----catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaa 126  Q
    ||||||| ||||||||||||||||| ||||||     | |||||||||||||||| ||||||||||  ||||||| | |||| ||| | |||||||||||    
T  44482343 aactatggagcacggacactcctcggattagctgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat-gtgattttctcaa 44482245  T
Q  127 attattagcgg 137  Q
    ||||| |||||    
T  44482244 attataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 41877505 - 41877554
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    ||||||||||||||||||||||||||||||  |||| |||||| ||||||    
T  41877505 attttctcaaattattagcggtgtcggcgtaccagtgtctgtgtcgtgtc 41877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgc 160  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 609493 - 609528
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| |||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 1486703 - 1486796
Alignment:
Q  77 ccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    ||||||| ||||||||||  ||||||| | |||| ||| | |||||| ||||||||||||| ||||| ||||||||||||| ||| ||| |||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattat-gtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 38503386 - 38503313
Alignment:
Q  76 accgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    |||||||  |||||||||||||  |||| | |||||||||  |||||||||||||||||||||||||||| ||||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatat-gattttctcaaattattagcggtgtcggtgtgt 38503313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtat 178  Q
    ||||||||||| | |||||||||||||||| || ||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 1262933 - 1262876
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||| |||||||| |||| ||| | |||||||||||||||||||| |||||||||||||    
T  1262933 acacttaattatattgaattat-gtgattttctcaaattattagctgtgtcggcgtgtc 1262876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 5944304 - 5944254
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||| ||||||||||||| ||| |||||||||||| |||||| ||||||||    
T  5944304 ttttttcaaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccg 5944254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 7918245 - 7918303
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtcc 174  Q
    ||||||||||||||||||| | |||| |||||||| | |||||| ||||||||| ||||    
T  7918245 gattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtccggtgtcc 7918303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9709845 - 9709795
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    ||||||||||||||||||||||||| ||| ||||||| || ||| ||||||    
T  9709845 gattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 10475011 - 10475045
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    ||||||||||| |||||||||||||||||||||||    
T  10475011 gattttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtc 166  Q
    ||||||||||||||||||| |||||||| |||||||| || ||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 39130802 - 39130876
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||| |||||||||   ||||| |||||||| ||||  || ||||||||| |||||||| ||||||||||||    
T  39130802 attttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 40285686 - 40285724
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40285686 gcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 14359562 - 14359607
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    ||||||||||||| ||||||||||||| || |||||| ||||||||    
T  14359562 tcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccg 14359607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 19324587 - 19324518
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgct 185  Q
    |||||||||||||||| ||| |||||| ||| |||||  |||||| |||||||| |||||  ||||||||    
T  19324587 gattttctcaaattatcagcagtgtcgacgtatcagtgcctgtgctgtgtccggtgtccgcgttcgtgct 19324518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 21530714 - 21530681
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||| |||||||||||||||    
T  21530714 gattttctcaaattattaacggtgtcggcgtgtc 21530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 25361960 - 25361881
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgt 146  Q
    |||||||||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||| || |||||||||||    
T  25361960 tgtccgacaccgacacgacactgacacatataattacactgaattat-gtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 5898300 - 5898352
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccg 168  Q
    |||||| ||| |||||||||||||||||||| ||||| |||||| | ||||||    
T  5898300 gattttttcagattattagcggtgtcggcgtctcagtgtctgtgtcatgtccg 5898352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6415035 - 6415071
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  6415035 gattttctcaaataattagcgatgtcggcgtgtcagt 6415071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 9828118 - 9828036
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataa--ttataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||| ||||| ||||| ||||||||||||||  ||| | |||| ||| | |||||| |||||||||||| ||||||||||||||    
T  9828118 tgtctgacacggacacgacaccgacacataaaattacactgaattat-gtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 25452152 - 25452215
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||||| |||| ||| ||||    
T  25452152 acaccgacacataattacactgaattat-gagattttctcaaattattagcagtgttggcatgtc 25452215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 46348417 - 46348453
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  46348417 gattttttcaaattattagctgtgtcggcgtgtcagt 46348453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 21149 - 21002
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattatta 133  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | ||||||||  |||||||||  ||  ||| | ||||||||||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacatataattataccgacttat-gtgattttctcaaattatta 21051  T
Q  134 gcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgt 182  Q
     | ||||| || ||||||| || ||| |||||| || |||||| |||||    
T  21050 accgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 847975 - 847918
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtcc 174  Q
    |||||||||||||||||||||  ||||||||||||| |||||| ||||||||| ||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 28084544 - 28084475
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttc 187  Q
    |||| ||||||| ||||| |||||||||||||||  |||||| ||||||||| ||||||||  |||||||    
T  28084544 ttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 23293020 - 23293080
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||| | || ||| ||||||||| ||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 21945527 - 21945468
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||| ||||||||||||| |||||||| ||||||| |||||| | ||||||| ||||||    
T  21945527 attttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgt 21945468  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 2234305 - 2234232
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtg 159  Q
    |||| |||||||||||| | |||| ||| | |||||||||||||||| | ||||| | |||||||||||||||||    
T  2234305 acactgacacataattacattgaattat-gtgattttctcaaattatcaacggtgacagcgtgtcagtatctgtg 2234232  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 30982863 - 30982935
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtg 139  Q
    |||| ||||||||||| ||||||||||  ||||||| | |||||||| | ||||||||||||| ||||||||||    
T  30982863 tgtctgacaccgacacgacaccgacacttataattacactgaaatat-gtgattttctcaaatcattagcggtg 30982935  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 40613475 - 40613441
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||||||||| ||||||||||||||||||||||    
T  40613475 gattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccgg 169  Q
    ||||||||||||||||||| ||||| ||||||||||| || | | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 1747237 - 1747205
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||||||| |||||||||||||||||||||    
T  1747237 gattttctcaatttattagcggtgtcggcgtgt 1747205  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 3947798 - 3947877
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatagtat 194  Q
    |||||||| ||||||||||||| |||||||| |||| || ||||||  |||||| | ||||||||  | ||||||||||||    
T  3947798 gcgattttttcaaattattagctgtgtcggcatgtccgtgtctgtgtggtgtcc-gtgtccgtatctgagcttcatagtat 3947877  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 7012090 - 7012058
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||| |||||||||||||||    
T  7012090 attttctcaaattattatcggtgtcggcgtgtc 7012058  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 80  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 17903 - 17979
Alignment:
Q  115 cgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||||||||| |||||||  || | |||  ||||||| | |||||||| ||||||||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtgttggtgtttgtatcgtgtccagtgtccgtatccgtgcttcatag 17979  T

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Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 8823 - 8763
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||||| || ||| ||||||||| ||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 53256 - 53170
Alignment:
Q  66 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcag 151  Q
    ||||||||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||||||||||| ||||| ||||||||||||    
T  53256 catgtccgacaccgacacggcaccgacacttataattacactgaattat-gtgattttctcaaattattggcggtatcggcgtgtcag 53170  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 225303 - 225362
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| || ||| ||||||||| ||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 92831 - 92796
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagt 92796  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 241668 - 241559
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgt 165  Q
    ||||||||||| |||| ||||||||||  ||||||| | | || ||| | ||||||  |||||||||||| |||||||||||||||| || ||| |||||    
T  241668 tgtccgacaccaacacgacaccgacactcataattacactaaattat-gtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 241570  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  241569 ccggtgtccgt 241559  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 178853 - 178925
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||  |||||||||||||||| || ||| ||||||||| |||  ||| |||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttca 178925  T

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Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 192284 - 192319
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||| ||||||||||||||||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagt 192319  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 23433 - 23371
Alignment:
Q  128 ttattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| | |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  23433 ttattatctgtgtcggcgtgtcagtgtctgtgtcgtgtcc-gtgtccgtatccgtgcttcatag 23371  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 90868 - 90793
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||||  ||||| || |||||||| |||||| ||||||| |  |||||||| |||| ||||||    
T  90868 gattttctcaaattattaatggtgttggtgtgtcagtgtctgtgtcgtgtccagtatccgtatttgtgcatcatag 90793  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 135346 - 135421
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||| ||||||| ||||  || |||||| ||| | ||| |||||||| | ||||||||||    
T  135346 gattttctcaaattattagcagtgtcggtgtgttggtgtctgtgtcgtattcggtgtccgtatccatgcttcatag 135421  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 1669 - 1636
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||| |||||||||||||||    
T  1669 gattttctcaaattattaacggtgtcggcgtgtc 1636  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 496 - 556
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatctgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||| ||||| || ||| ||||| ||| ||||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 28913 - 28843
Alignment:
Q  79 gacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||| |||||||||||||  |||| | |||| ||| |||||||||| ||||||||| ||||||||||||||    
T  28913 gacacaacaccgacacatataattacattgaattat-gcgattttcttaaattattaacggtgtcggcgtgt 28843  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 51836 - 51800
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  51836 gattttttcaaattattagctgtgtcggcgtgtcagt 51800  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 82  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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