View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_3 (Length: 598)
Name: NF10448_3
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_3 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 400
Target Start/End: Original strand, 6958295 - 6958665
Alignment:
| Q |
30 |
tcaagtaacattatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcaatataagtgttattg |
129 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6958295 |
tcaagtaacattatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcagtataagtgttattg |
6958394 |
T |
|
| Q |
130 |
tgatttttggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggt |
229 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958395 |
tgatttttggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggt |
6958494 |
T |
|
| Q |
230 |
cttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958495 |
cttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaa |
6958594 |
T |
|
| Q |
330 |
tgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
400 |
Q |
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| T |
6958595 |
tgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 423 - 594
Target Start/End: Original strand, 6958696 - 6958870
Alignment:
| Q |
423 |
cgtgtagatattatcgttttaaagattgaaattttatgcagaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaa |
522 |
Q |
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| T |
6958696 |
cgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaa |
6958795 |
T |
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| Q |
523 |
ttcaatatatt---aaccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatag |
594 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |
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| T |
6958796 |
ttcaatatatttagaaccctatctttattaatagtaaagcacaaagaggtttcagaaggacattacacataatag |
6958870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 439 - 588
Target Start/End: Complemental strand, 23007116 - 23006964
Alignment:
| Q |
439 |
ttttaaagattgaaattttatgcagaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
535 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
23007116 |
ttttaaagattgaagttttatgccgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagcaagcatattctttgaattcaatatattcagga |
23007017 |
T |
|
| Q |
536 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacaca |
588 |
Q |
| |
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||||||||||||||| |||||| |||| ||||||||| |||| |||||||||| |
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| T |
23007016 |
ccctatctttattaacaggaaaacacagagaggttcctgaaggacattacaca |
23006964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 439 - 588
Target Start/End: Complemental strand, 30575384 - 30575232
Alignment:
| Q |
439 |
ttttaaagattgaaattttatgcagaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
535 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
30575384 |
ttttaaagattgaagttttatgctgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagctagcatattctttgaattcaatatattcagga |
30575285 |
T |
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| Q |
536 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacaca |
588 |
Q |
| |
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||||||||||||||| |||||| |||| |||| |||| |||| |||||||||| |
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| T |
30575284 |
ccctatctttattaacaggaaaacacagagagattcctgaaggacattacaca |
30575232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
184 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
279 |
Q |
| |
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||||| |||||||||||||||| ||||||| | |||||||| |||||||| ||||||| |||||| || ||||| | |||||||||||||||||| |
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| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
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| Q |
280 |
t |
280 |
Q |
| |
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|
| T |
31081843 |
t |
31081843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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