View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_4 (Length: 471)
Name: NF10448_4
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_4 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 39228233 - 39227791
Alignment:
| Q |
1 |
ctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttctggaactttttcatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
39228233 |
ctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactggatatatcaaacttgaatgtttctggaactttttcatctt |
39228134 |
T |
|
| Q |
101 |
ccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228133 |
ccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagt |
39228034 |
T |
|
| Q |
201 |
tcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228033 |
tcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctat |
39227934 |
T |
|
| Q |
301 |
ggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227933 |
ggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatc |
39227834 |
T |
|
| Q |
401 |
ttactaatcttacacaccttttgttaggttattacaatgagtt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39227833 |
ttactaatcttacacaccttttgttaggttattacaatgagtt |
39227791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 25547432 - 25546990
Alignment:
| Q |
1 |
ctttgtactacttggtatggtattcaatgtgacacaaacaatagttctgttgtgtcactagatatatcaaacttgaatatttctggaactttttcatctt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25547432 |
ctttgtactacttggtatgatattcaatgtgacacaaacaatagttctgttttgtcactagatatatcaaacttgaatgtttctggaactttttcatctt |
25547333 |
T |
|
| Q |
101 |
ccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547332 |
ccatcacaaaactatcaaacttgagattcctcaacatatccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagt |
25547233 |
T |
|
| Q |
201 |
tcttgatgcttacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547232 |
tcttgatgcttacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctat |
25547133 |
T |
|
| Q |
301 |
ggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25547132 |
ggagaaattccttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatc |
25547033 |
T |
|
| Q |
401 |
ttactaatcttacacaccttttgttaggttattacaatgagtt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25547032 |
ttactaatcttacacaccttttgttaggttattacaatgagtt |
25546990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
334 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
399 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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|
| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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