View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_5 (Length: 434)
Name: NF10448_5
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 39227421 - 39227842
Alignment:
| Q |
13 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39227421 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcaccatagagtttgttgatgaacaag |
39227520 |
T |
|
| Q |
113 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227521 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
39227620 |
T |
|
| Q |
213 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227621 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
39227720 |
T |
|
| Q |
313 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227721 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgt |
39227820 |
T |
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| Q |
413 |
gtaagattagtaagatttccaa |
434 |
Q |
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| T |
39227821 |
gtaagattagtaagatttccaa |
39227842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 25546622 - 25547041
Alignment:
| Q |
13 |
agaacctgtgaagttgttttgccaaagctttaacacttccaaatttggtaactcagnnnnnnnngatggaatttcaccatagagtttgttgatgaacaag |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
25546622 |
agaacctgtgaagttgttatgccaaagctttaacacttccaaatttggtaactcagaaaaaaaagatggaatttcacca--gagtttgttgatgaacaag |
25546719 |
T |
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| Q |
113 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546720 |
ttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagattcc |
25546819 |
T |
|
| Q |
213 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25546820 |
ctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcgtagctcatgtggaattgaacctttcaa |
25546919 |
T |
|
| Q |
313 |
accacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgt |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546920 |
accacagtttgcaagatcaagatgaagtaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgt |
25547019 |
T |
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| Q |
413 |
gtaagattagtaagatttccaa |
434 |
Q |
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|||||||||||||||||||||| |
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| T |
25547020 |
gtaagattagtaagatttccaa |
25547041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 16733618 - 16733490
Alignment:
| Q |
184 |
atcaagagatttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagtttt |
283 |
Q |
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|||||||| ||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||||| |||||||||||||||| ||||| |||| ||||| |
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| T |
16733618 |
atcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgatttttttgcaagaaaagtgtatctagcttgttaagttga |
16733519 |
T |
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| Q |
284 |
cctagctcatgtggaattgaacctttcaa |
312 |
Q |
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|||| |||| ||||||||||||||||||| |
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| T |
16733518 |
cctaactcaagtggaattgaacctttcaa |
16733490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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