View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10448_8 (Length: 373)

Name: NF10448_8
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10448_8
NF10448_8
[»] chr4 (9 HSPs)
chr4 (13-373)||(26946212-26946564)
chr4 (282-368)||(26976024-26976110)
chr4 (282-368)||(27005796-27005882)
chr4 (282-368)||(26991350-26991436)
chr4 (46-146)||(26953845-26953945)
chr4 (47-146)||(26991176-26991275)
chr4 (283-335)||(26954273-26954325)
chr4 (46-146)||(26976184-26976284)
chr4 (47-146)||(27005622-27005721)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 26946212 - 26946564
Alignment:
Q  13 aatattcgtcaataattttaaaaataaataaaataacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26946212 aatattcgtcaataattttaaaaataaataaaataacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacata 26946311  T
Q  113 gctcatgtaatcacaaacaacagtagcaggacctaaacaagcgaaattaaaaacacaataactcaataatttctcattatgaaatcaaatcctaatataa 212  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26946312 gctcatgtaatcacaaacaacagtagcaggacctgcacaagcgaaattaaaaaaacaataactcaataatttctcattatgaaatcaaatcctaatataa 26946411  T
Q  213 acaatgcaaaatctcataatctcatagattcaaagcaacaaattatttaattatagtaactaaactatcaatacctaaagcagcaagctcaattgaactt 312  Q
    |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26946412 acaatgcaa--------aatctcatagattcaaagcaacaaattatttaattatagtaactaaactatcaatacctaaagcagcaagctcaattgaactt 26946503  T
Q  313 ccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccag 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26946504 ccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccag 26946564  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 26976110 - 26976024
Alignment:
Q  282 aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaag 368  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || | |||||||||||||||||||| ||||||    
T  26976110 aatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaatgagactcatcaacggtccacataaccaaag 26976024  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 27005796 - 27005882
Alignment:
Q  282 aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaag 368  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || | |||||||||||||||||||| ||||||    
T  27005796 aatacctaaagcagcaagttcaattgaacttccttgaccaacaacagctgtatcaatgagactcatcaacggtccacataaccaaag 27005882  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 26991350 - 26991436
Alignment:
Q  282 aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaag 368  Q
    |||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| || | ||||||||||||||| |||| ||||||    
T  26991350 aatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgagactcatcaacggtccgcataaccaaag 26991436  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 26953845 - 26953945
Alignment:
Q  46 taacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacc 145  Q
    ||||||||||||| |||||||||||||  |||||||| ||| ||||||| |||||||||||     || ||||||||||||||||||| || ||||||||    
T  26953845 taacctgtttagcaagggcagtagcaattatattggatgtaacaactgacagaaacatgaacgttaaggtcatgtaatcacaaacaaccgtggcaggacc 26953944  T
Q  146 t 146  Q
    |    
T  26953945 t 26953945  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 26991176 - 26991275
Alignment:
Q  47 aacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacct 146  Q
    |||||||||||| |||||||||||||||||||| ||||||||||  || |||||||| ||    |||| ||  |||||||||| ||||||||||||||||    
T  26991176 aacctgtttagcaagggcagtagcaaccatattcgaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacct 26991275  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 26954273 - 26954325
Alignment:
Q  283 atacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatc 335  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  26954273 atacctaaagcagcaagctcggttgaacttccctgaccaacaacagcagtatc 26954325  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 26976284 - 26976184
Alignment:
Q  46 taacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacc 145  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||  || | |||||| || |  |||| ||  ||||| |||| |||||||||||||||    
T  26976284 taacctgtttagcaagtgcagtagcaaccatattcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacc 26976185  T
Q  146 t 146  Q
    |    
T  26976184 t 26976184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 27005622 - 27005721
Alignment:
Q  47 aacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacct 146  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||  || |||||||| ||    || | ||  |||||||||| ||||||||||||||||    
T  27005622 aacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacagaaacataaaagagtaacccaaataatcacaaaaaacagtagcaggacct 27005721  T

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