View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_9 (Length: 362)
Name: NF10448_9
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_9 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 28465372 - 28465702
Alignment:
| Q |
12 |
gaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaatttgagttcacaagataatc |
111 |
Q |
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| T |
28465372 |
gaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaatttgagttcacaagataatc |
28465471 |
T |
|
| Q |
112 |
tatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaatttacaagaatgtaaggaatcatgtttgca |
211 |
Q |
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| T |
28465472 |
tatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaatttacaagaatgtaaggaatcatgtttgca |
28465571 |
T |
|
| Q |
212 |
agattgcttatgtgttttggttcattttgaccaagtccgaagttcctgctggaaaaagaagctcccactatcttatggtagaaatgatccggcagtaaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28465572 |
agattgcttatgtgttttggttcattttgaccaagtccgaagttcctgctggaaaaagaagctcccactatcttatggtagaaatgatccggcggtaaat |
28465671 |
T |
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| Q |
312 |
ggtatttcaatcatgaaattgatgaaaagtg |
342 |
Q |
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| T |
28465672 |
ggtatttcaatcatgaaattgatgaaaagtg |
28465702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 28487139 - 28487463
Alignment:
| Q |
12 |
gaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaatttgagttcacaagataatc |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
28487139 |
gaatattcaccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatttgtcaagcaggtgggaatttgggtccacaagataatc |
28487238 |
T |
|
| Q |
112 |
tatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaatttacaagaatgtaaggaatcatgtttgca |
211 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
28487239 |
tatatacaatgaaggatttactaaatactgattggcctgcatctgattatgaatttagaattccatctaatttacaagaatgtaaggaatcatgtttgca |
28487338 |
T |
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| Q |
212 |
agattgcttatgtgttttggttcattttgaccaagtccgaagttcctgctggaaaaagaagctcccactatcttatggtagaaatgatccggcagtaaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28487339 |
agattgcttatgtgttttggttcattttgaccaag------gttcttgttggaaaaagaagctcccactatcttatggtagaaatgatccggcggtaaaa |
28487432 |
T |
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| Q |
312 |
ggtatttcaatcatgaaattgatgaaaagtg |
342 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
28487433 |
ggtatttctatcatgaaattgatgaaaagtg |
28487463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 28444525 - 28444842
Alignment:
| Q |
14 |
atattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaatttgagttcacaagataatcta |
113 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||| |||| | ||||||| | ||||| |
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| T |
28444525 |
atattctccgattgattcaaataacatgtatcttggttgcataccgaatttccaagttatttgtcaagcaggtggaaattgggattcacaaaaagatcta |
28444624 |
T |
|
| Q |
114 |
tatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaatttacaagaatgtaaggaatcatgtttgcaag |
213 |
Q |
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|||||||||||||| || ||||||||||||||||| | |||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||| || |
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| T |
28444625 |
tatacaatgaaggaattgccaaatactgattggccagaatctgattatgaaataataagcccatctagtctacaagaatgtaaggaatcatgtttgcgag |
28444724 |
T |
|
| Q |
214 |
attgcttatgtgttttggttcattttgaccaagtccgaagttcctgctggaaaaagaagctcccactatcttatggtagaaatgatccggcagtaaatgg |
313 |
Q |
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|||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| || ||||| |||||||||| || ||| || || |
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| T |
28444725 |
attgcttatgtgttttggtttctttcaacca------aagttcctgctggaagaagaagctcccactctcgtatgggagaaatgatcagggagttaaagg |
28444818 |
T |
|
| Q |
314 |
tatttcaatcatgaaattgatgaa |
337 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
28444819 |
aatttcaatcatgaaattgatgaa |
28444842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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