View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10448_low_1 (Length: 360)
Name: NF10448_low_1
Description: NF10448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10448_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 43062116 - 43061778
Alignment:
| Q |
1 |
gttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacc |
100 |
Q |
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| T |
43062116 |
gttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacc |
43062017 |
T |
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| Q |
101 |
tcaaagttccattgaaattaaacaataatgcaacctttaccttcacccgggttttgcccgacaaatgcaatgttgtgttctaggttctacctacggtatt |
200 |
Q |
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| T |
43062016 |
tcaaagttccattgaaatcaaacaataatgcaacctttaccttcacccgggttttgcccgaaaaatgcaatgttgtgttctaggttctacctacggtatt |
43061917 |
T |
|
| Q |
201 |
tgcatacgtagaattttattttagttaccaaatatttcttttctgtaattctaatgatttgcgatgaaatttgttatttgtttattcattcattgttaaa |
300 |
Q |
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| T |
43061916 |
tgcatacgtagaattttattttagttaccaaatatttcttttctgtaattctaatgatttgcgatgaaattttttatttgtttattcattcattgttaaa |
43061817 |
T |
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| Q |
301 |
catgttataccatcatgaagtgtgtactttggttctcga |
339 |
Q |
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| T |
43061816 |
catgttataccatcatgtagtgtgtactttggttctcga |
43061778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 43054865 - 43054751
Alignment:
| Q |
1 |
gttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| | | | ||| |||||||||||||| |||| |
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| T |
43054865 |
gttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtcaaatgcgacc |
43054766 |
T |
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| Q |
101 |
tcaaagttccattga |
115 |
Q |
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||| |||||| |||| |
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| T |
43054765 |
tcacagttcctttga |
43054751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 43049326 - 43049217
Alignment:
| Q |
6 |
agtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaa |
105 |
Q |
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|||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| || | |||||| | |||||||||||||| ||||||||| ||||| |
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| T |
43049326 |
agtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcctaaggtgaaatgtgacttcaaa |
43049227 |
T |
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| Q |
106 |
gttccattga |
115 |
Q |
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||||| |||| |
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| T |
43049226 |
gttcctttga |
43049217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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